RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA695140" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 2 ✖

bioproject 1

  • PRJNA695140 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3227131 3227131 PRJNA695140_S_NODE_9083_length_176_cov_2.302158_g8902_i0 PRJNA695140 9083 176 2.302158 4.05179808 Cavenderia fasciculata 261658 Evosea other_Eukaryota 141 3.08e-29   NTclustered gi|187764061|ref|NC_010653.1| 261658 g8902 i0 83.766 11.9090909090909 154 20 86 4 4 154 20935 20784 Dictyostelium fasciculatum mitochondrion, complete genome blastn 2096 141 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
8329233 8329233 PRJNA695140_S_NODE_3207_length_292_cov_4.898039_g3026_i0 PRJNA695140 3207 292 4.898039 14.30227388 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 473 4.8699999999999987e-129   NTclustered gi|221185864|gb|FJ577811.1| 590481 g3026 i0 97.482 82.7465753424657 278 6 95 1 1 277 305 582 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 24162 473 1 Eukaryota Amoebozoa             uncultured Amoebozoa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;