RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA694770" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA694770 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1951188 1951188 PRJNA694770_P_NODE_69482_length_265_cov_1.223958_g69188_i0 PRJNA694770 69482 265 1.223958 3.2434887 Magallana gigas 29159 Mollusca Mollusca 52.8 0.024   NTclustered gi|2751232360|ref|XR_010710187.1| 29159 g69188 i0 100 0.105660377358491 28 0 11 0 45 72 93 66 PREDICTED: Magallana gigas uncharacterized lncRNA (LOC136272225), ncRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas
8327142 8327142 PRJNA694770_P_NODE_25647_length_385_cov_0.910256_g25353_i0 PRJNA694770 25647 385 0.910256 3.5044856 Argopecten irradians 31199 Mollusca Mollusca 52.8 0.037   NTclustered gi|2835371402|ref|XM_069259970.1| 31199 g25353 i0 100 0.0727272727272727 28 0 7 0 215 242 408 381 PREDICTED: Argopecten irradians eIF-2-alpha kinase GCN2-like (LOC138317976), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Argopecten Argopecten irradians
14704436 14704436 PRJNA694770_P_NODE_78492_length_251_cov_0.865169_g78198_i0 PRJNA694770 78492 251 0.865169 2.17157419 Magallana gigas 29159 Mollusca Mollusca 54.7 0.006   NTclustered gi|2751291146|ref|XR_004601737.2| 29159 g78198 i0 96.875 0.127490039840637 32 1 13 0 1 32 495 464 PREDICTED: Magallana gigas uncharacterized lncRNA (LOC117689457), ncRNA blastn 32 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Ostreida Ostreidae Magallana Magallana gigas

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;