RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA694770" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA694770 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4503453 4503453 PRJNA694770_P_NODE_76304_length_253_cov_1.711111_g76010_i0 PRJNA694770 76304 253 1.711111 4.32911083 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 276 1.2499999999999998e-69   NTclustered gi|2874253728|emb|OY969570.1| 412054 g76010 i0 86.508 63.3359683794466 252 32 99 1 2 253 172443 172692 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 16024 276 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5778367 5778367 PRJNA694770_P_NODE_57305_length_283_cov_2.180952_g57011_i0 PRJNA694770 57305 283 2.180952 6.17209416 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 451 2.1999999999999995e-122   NTclustered gi|2874253978|emb|OY970303.1| 412054 g57011 i0 95.406 197.289752650177 283 13 100 0 1 283 1902499 1902217 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 55833 451 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
5779140 5779140 PRJNA694770_P_NODE_84965_length_248_cov_0.880000_g84671_i0 PRJNA694770 84965 248 0.88 2.1824 Gemmatimonas phototrophica 1379270 Bacteria Bacteria 180 9.859999999999999e-41   NTclustered gi|1015602748|gb|CP011454.1| 1379270 g84671 i0 82.547 3.41532258064516 212 30 84 7 34 241 2982914 2982706 Gemmatimonas phototrophica strain AP64, complete genome blastn 847 180 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas phototrophica
13428770 13428770 PRJNA694770_P_NODE_62271_length_276_cov_1.517241_g61977_i0 PRJNA694770 62271 276 1.517241 4.18758516 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 189 1.8499999999999993e-43   NTclustered gi|2874253755|emb|OY969695.1| 412054 g61977 i0 79.061 3.68840579710145 277 56 100 2 1 276 238669 238394 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 1018 189 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
22351410 22351410 PRJNA694770_P_NODE_27798_length_373_cov_1.540000_g27504_i0 PRJNA694770 27798 373 1.54 5.7442 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 300 1.15e-76   NTclustered gi|2874253978|emb|OY970303.1| 412054 g27504 i0 81.627 248.227882037534 381 52 100 16 1 373 1904700 1904330 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 92589 300 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;