RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA694770" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA694770 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1181455 1181455 PRJNA694770_P_NODE_94401_length_243_cov_6.217647_g94107_i0 PRJNA694770 94401 243 6.217647 15.10888221 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 438 1.4399999999999996e-118   NTclustered gi|2651357791|gb|PP174306.1| 41631 g94107 i0 99.177 100.333333333333 243 2 100 0 1 243 2897 2655 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24381 438 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
2455376 2455376 PRJNA694770_P_NODE_2302_length_1316_cov_2.432824_g2115_i0 PRJNA694770 2302 1316 2.432824 32.01596384 Pseudocohnilembidae 35102 SAR_Eukaryotes SAR_Eukaryotes 754 0   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g2115 i0 80.224 60.1534954407295 1072 156 80 36 249 1307 5371 6399 Cryptocaryon irritans mitochondrion, complete genome blastn 79162 754 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
3225355 3225355 PRJNA694770_P_NODE_3863_length_1009_cov_3.127137_g3625_i0 PRJNA694770 3863 1009 3.127137 31.55281233 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 285 9.27e-72   NTclustered gi|114329857|ref|NC_008338.1| 5905 g3625 i0 75.389 5.93062438057483 707 113 69 45 1 695 3295 2638 Tetrahymena paravorax mitochondrion, complete genome blastn 5984 285 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
6284959 6284959 PRJNA694770_P_NODE_6625_length_746_cov_4.741456_g6345_i0 PRJNA694770 6625 746 4.741456 35.37126176 Colpodidae 5978 SAR_Eukaryotes SAR_Eukaryotes 1155 0   NTclustered gi|2166921685|gb|OL894853.1| 63136 g6345 i0 96.317 75.1809651474531 706 20 94 5 43 746 1021 320 Colpoda steini clone MITTA small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 56085 1155 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
21076128 21076128 PRJNA694770_P_NODE_13197_length_514_cov_2.056689_g12903_i0 PRJNA694770 13197 514 2.056689 10.57138146 Colpoda steini 63136 SAR_Eukaryotes SAR_Eukaryotes 427 7.159999999999998e-115   NTclustered gi|2166921685|gb|OL894853.1| 63136 g12903 i0 98.361 30.4766536964981 244 2 47 2 1 244 245 4 Colpoda steini clone MITTA small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 15665 427 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;