RNAquarium Metadata Server
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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA694770" and tax_clade = "Sar"

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tax_phylum 4

tax_superkingdom 1

tax_clade 1

  • Sar · 12 ✖

bioproject 1

  • PRJNA694770 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
674548 674548 PRJNA694770_P_NODE_46181_length_308_cov_0.982979_g45887_i0 PRJNA694770 46181 308 0.982979 3.02757532 Heteromita globosa 45107 SAR_Eukaryotes SAR_Eukaryotes 536 6.51e-148   NTclustered gi|238617605|gb|FJ973380.1| 45107 g45887 i0 98.052 100.545454545455 308 6 100 0 1 308 1669 1362 Heteromita globosa strain ATCC 50780 28S ribosomal RNA gene, partial sequence blastn 30968 536 1 Eukaryota Sar   Cercozoa   Cercomonadida Heteromitidae Heteromita Heteromita globosa
1181455 1181455 PRJNA694770_P_NODE_94401_length_243_cov_6.217647_g94107_i0 PRJNA694770 94401 243 6.217647 15.10888221 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 438 1.4399999999999996e-118   NTclustered gi|2651357791|gb|PP174306.1| 41631 g94107 i0 99.177 100.333333333333 243 2 100 0 1 243 2897 2655 Colpoda sp. isolate JGP15 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 24381 438 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
2455376 2455376 PRJNA694770_P_NODE_2302_length_1316_cov_2.432824_g2115_i0 PRJNA694770 2302 1316 2.432824 32.01596384 Pseudocohnilembidae 35102 SAR_Eukaryotes SAR_Eukaryotes 754 0   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g2115 i0 80.224 60.1534954407295 1072 156 80 36 249 1307 5371 6399 Cryptocaryon irritans mitochondrion, complete genome blastn 79162 754 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans
3225355 3225355 PRJNA694770_P_NODE_3863_length_1009_cov_3.127137_g3625_i0 PRJNA694770 3863 1009 3.127137 31.55281233 Tetrahymena paravorax 5905 SAR_Eukaryotes SAR_Eukaryotes 285 9.27e-72   NTclustered gi|114329857|ref|NC_008338.1| 5905 g3625 i0 75.389 5.93062438057483 707 113 69 45 1 695 3295 2638 Tetrahymena paravorax mitochondrion, complete genome blastn 5984 285 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena paravorax
5779367 5779367 PRJNA694770_P_NODE_92985_length_244_cov_0.900585_g92691_i0 PRJNA694770 92985 244 0.900585 2.1974274 Plasmodium brasilianum 5824 SAR_Eukaryotes SAR_Eukaryotes 58.4 4.73e-4   NTclustered gi|2785766342|ref|XM_067218290.1| 5824 g92691 i0 94.595 0.278688524590164 37 2 15 0 137 173 3037 3073 Plasmodium brasilianum uncharacterized protein (MKS88_005062), partial mRNA blastn 68 58.4 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium brasilianum
6284959 6284959 PRJNA694770_P_NODE_6625_length_746_cov_4.741456_g6345_i0 PRJNA694770 6625 746 4.741456 35.37126176 Colpodidae 5978 SAR_Eukaryotes SAR_Eukaryotes 1155 0   NTclustered gi|2166921685|gb|OL894853.1| 63136 g6345 i0 96.317 75.1809651474531 706 20 94 5 43 746 1021 320 Colpoda steini clone MITTA small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 56085 1155 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
7558073 7558073 PRJNA694770_P_NODE_26506_length_380_cov_1.293160_g26212_i0 PRJNA694770 26506 380 1.29316 4.914008 root 1 Root_unresolved Root_unresolved 686 0   NTclustered gi|166044642|emb|CU367551.1| 100861 g26212 i0 99.211 100.097368421053 380 3 100 0 1 380 317 696 Aphanomyces euteiches cDNA blastn 38037 691 0.992764109985528 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
15978496 15978496 PRJNA694770_P_NODE_89313_length_246_cov_0.890173_g89019_i0 PRJNA694770 89313 246 0.890173 2.18982558 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 392 1.15e-104   NTclustered gi|325194231|emb|FR825088.1| 890382 g89019 i0 95.528 1.49186991869919 246 10 100 1 1 246 1289 1045 Albugo laibachii Nc14, genomic contig CONTIG_1612_NC14_v4_1853_85 blastn 367 392 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
20306980 20306980 PRJNA694770_P_NODE_44036_length_314_cov_1.278008_g43742_i0 PRJNA694770 44036 314 1.278008 4.01294512 root 1 Root_unresolved Root_unresolved 508 1.45e-139   NTclustered gi|166044588|emb|CU367497.1| 100861 g43742 i0 95.86 73.5700636942675 314 13 100 0 1 314 32 345 Aphanomyces euteiches cDNA blastn 23101 508 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
21076128 21076128 PRJNA694770_P_NODE_13197_length_514_cov_2.056689_g12903_i0 PRJNA694770 13197 514 2.056689 10.57138146 Colpoda steini 63136 SAR_Eukaryotes SAR_Eukaryotes 427 7.159999999999998e-115   NTclustered gi|2166921685|gb|OL894853.1| 63136 g12903 i0 98.361 30.4766536964981 244 2 47 2 1 244 245 4 Colpoda steini clone MITTA small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 15665 427 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
21582933 21582933 PRJNA694770_P_NODE_50917_length_294_cov_2.248869_g50623_i0 PRJNA694770 50917 294 2.248869 6.61167486 root 1 Root_unresolved Root_unresolved 544 3.69e-150   NTclustered gi|166046790|emb|CU367365.1| 100861 g50623 i0 100 14.9795918367347 294 0 100 0 1 294 798 505 Aphanomyces euteiches cDNA blastn 4404 544 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
22858277 22858277 PRJNA694770_P_NODE_60618_length_279_cov_1.092233_g60324_i0 PRJNA694770 60618 279 1.092233 3.04733007 root 1 Root_unresolved Root_unresolved 468 2.15e-127   NTclustered gi|166044639|emb|CU367548.1| 100861 g60324 i0 97.445 69.8530465949821 274 7 98 0 1 274 391 118 Aphanomyces euteiches cDNA blastn 19489 468 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;