RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "blastn", bioproject = "PRJNA694770" and tax_clade = "Discoba"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Discoba · 9 ✖

bioproject 1

  • PRJNA694770 · 9 ✖

analysis 1

  • blastn · 9 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3226594 3226594 PRJNA694770_P_NODE_84023_length_248_cov_1.760000_g83729_i0 PRJNA694770 84023 248 1.76 4.3648 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 424 4.13e-114   NTclustered gi|529154115|gb|EU266548.2| 500012 g83729 i0 97.59 37.2862903225806 249 2 100 4 1 248 740 985 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 9247 424 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
4501893 4501893 PRJNA694770_P_NODE_19844_length_426_cov_1.963173_g19550_i0 PRJNA694770 19844 426 1.963173 8.36311698 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 760 0   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g19550 i0 98.826 30.4788732394366 426 5 100 0 1 426 3112 3537 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12984 760 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
4502019 4502019 PRJNA694770_P_NODE_24684_length_390_cov_1.943218_g24390_i0 PRJNA694770 24684 390 1.943218 7.5785502 Allovahlkampfia sp. S35YCH 2919519 Heterolobosea other_Eukaryota 708 0   NTclustered gi|2199280130|dbj|LC683687.1| 2919519 g24390 i0 99.487 89.2051282051282 390 1 100 1 1 390 1402 1014 Allovahlkampfia sp. S35YCH gene for 18S ribosomal RNA, partial sequence blastn 34790 708 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. S35YCH
7052312 7052312 PRJNA694770_P_NODE_12806_length_522_cov_1.699332_g12514_i0 PRJNA694770 12806 522 1.699332 8.87051304 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 702 0   NTclustered gi|2651357784|gb|PP174299.1| 1874883 g12514 i0 91.44 18.7547892720307 514 40 98 4 1 511 2058 2570 Allovahlkampfia sp. isolate S28D2 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9790 702 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
8834341 8834341 PRJNA694770_P_NODE_93507_length_244_cov_0.900585_g93213_i0 PRJNA694770 93507 244 0.900585 2.1974274 Naegleria 5761 Heterolobosea other_Eukaryota 451 1.86e-122   NTclustered gi|2618963742|gb|OR769034.1| 5762 g93213 i0 100 76.0655737704918 244 0 100 0 1 244 3072 3315 Naegleria gruberi strain NEG-M rDNA-containing extrachromosomal element genomic sequence; and 18S small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S large subunit ribosomal RNA gene, complete sequence blastn 18560 451 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
13428547 13428547 PRJNA694770_P_NODE_54471_length_287_cov_2.836449_g54177_i0 PRJNA694770 54471 287 2.836449 8.14060863 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 424 4.88e-114   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g54177 i0 93.38 3.00696864111498 287 17 100 2 1 287 3908 3624 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 863 424 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.
15977681 15977681 PRJNA694770_P_NODE_59773_length_280_cov_1.217391_g59479_i0 PRJNA694770 59773 280 1.217391 3.4086948 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 518 2.12e-142   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g59479 i0 100 54.7464285714286 280 0 100 0 1 280 1405 1684 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 15329 518 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
19801584 19801584 PRJNA694770_P_NODE_52496_length_290_cov_2.009217_g52202_i0 PRJNA694770 52496 290 2.009217 5.8267293 Allovahlkampfia sp. strain SO/1P 500012 Heterolobosea other_Eukaryota 529 1.0199999999999996e-145   NTclustered gi|529154115|gb|EU266548.2| 500012 g52202 i0 99.655 73.2034482758621 290 0 100 1 1 290 1460 1748 Allovahlkampfia sp. strain SO/1P small subunit ribosomal RNA gene, complete sequence blastn 21229 529 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. strain SO/1P
23628428 23628428 PRJNA694770_P_NODE_88259_length_246_cov_1.780347_g87965_i0 PRJNA694770 88259 246 1.780347 4.37965362 Allovahlkampfia sp. PKD 2011b 1217111 Heterolobosea other_Eukaryota 427 3.16e-115   NTclustered gi|399764159|gb|JQ271670.1| 1217111 g87965 i0 97.967 25.7560975609756 246 5 100 0 1 246 472 227 Allovahlkampfia sp. PKD 2011b strain PV66 18S ribosomal RNA gene, partial sequence blastn 6336 427 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011b

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;