RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA694770" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 6 ✖

bioproject 1

  • PRJNA694770 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1949650 1949650 PRJNA694770_P_NODE_13622_length_506_cov_5.969977_g13328_i0 PRJNA694770 13622 506 5.969977 30.20808362 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 678 0   NTclustered gi|300078498|gb|GU001160.1| 5755 g13328 i0 90.875 11.2233201581028 526 19 100 17 1 506 5925 5409 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5679 678 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3732433 3732433 PRJNA694770_P_NODE_46603_length_306_cov_1.982833_g46309_i0 PRJNA694770 46603 306 1.982833 6.06746898 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 549 8.3e-152   NTclustered gi|909719646|gb|KT185626.1| 5755 g46309 i0 99.02 43.6013071895425 306 3 100 0 1 306 3941 3636 Acanthamoeba castellanii 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 13342 549 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
3732909 3732909 PRJNA694770_P_NODE_73403_length_258_cov_1.664865_g73109_i0 PRJNA694770 73403 258 1.664865 4.2953517 Acanthamoeba 5754 Discosea other_Eukaryota 477 3.2699999999999985e-130   NTclustered gi|2044079942|gb|MZ272134.1| 5756 g73109 i0 100 100.631782945736 258 0 100 0 1 258 2306 2563 Acanthamoeba sp. isolate AcW153B small subunit ribosomal RNA gene, partial sequence blastn 25963 477 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba sp.
10878010 10878010 PRJNA694770_P_NODE_24309_length_392_cov_3.667712_g24015_i0 PRJNA694770 24309 392 3.667712 14.37743104 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 571 2.3299999999999993e-158   NTclustered gi|300078498|gb|GU001160.1| 5755 g24015 i0 93.165 38.6352040816327 395 18 100 8 1 392 7812 7424 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 15145 571 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
23627181 23627181 PRJNA694770_P_NODE_41859_length_320_cov_3.093117_g41565_i0 PRJNA694770 41859 320 3.093117 9.8979744 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 381 3.3699999999999995e-101   NTclustered gi|300078498|gb|GU001160.1| 5755 g41565 i0 88.58 17.8 324 24 100 10 1 320 6751 7065 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5696 381 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
24901135 24901135 PRJNA694770_P_NODE_56140_length_285_cov_1.452830_g55846_i0 PRJNA694770 56140 285 1.45283 4.1405655 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 272 1.86e-68   NTclustered gi|300078498|gb|GU001160.1| 5755 g55846 i0 84.106 19.8561403508772 302 27 100 15 1 285 6472 6175 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 5659 272 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;