RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA694557" and tax_phylum = "Nitrospirota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospirota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA694557 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8326655 8326655 PRJNA694557_P_NODE_9787_length_437_cov_6.425824_g9567_i0 PRJNA694557 9787 437 6.425824 28.08085088 Nitrospira sp. 70125 Bacteria Bacteria 195 6.63e-45   NTclustered gi|2863125063|dbj|AP038805.1| 70125 g9567 i0 77.545 1.55148741418764 334 67 76 7 88 418 2106048 2105720 MAG: Nitrospira sp. AFB01 DNA, complete genome blastn 678 195 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
9601948 9601948 PRJNA694557_P_NODE_6608_length_561_cov_3.735656_g6389_i0 PRJNA694557 6608 561 3.735656 20.95703016 Nitrospira sp. 70125 Bacteria Bacteria 638 3.3399999999999996e-178   NTclustered gi|2511635996|gb|CP126122.1| 70125 g6389 i0 87.636 1.96613190730838 550 67 98 1 11 560 1763665 1763117 MAG: Nitrospira sp. isolate bin_005 chromosome blastn 1103 638 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
15976212 15976212 PRJNA694557_P_NODE_4353_length_724_cov_3.992320_g4142_i0 PRJNA694557 4353 724 3.99232 28.9043968 Nitrospira sp. 70125 Bacteria Bacteria 944 0   NTclustered gi|2194428397|gb|CP092079.1| 70125 g4142 i0 90.896 3.90883977900552 703 64 97 0 22 724 266445 265743 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 2830 944 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.
17251170 17251170 PRJNA694557_P_NODE_18074_length_298_cov_4.275556_g17854_i0 PRJNA694557 18074 298 4.275556 12.74115688 Nitrospira sp. 70125 Bacteria Bacteria 198 3.3599999999999993e-46   NTclustered gi|2194428397|gb|CP092079.1| 70125 g17854 i0 86.932 1.27181208053691 176 23 59 0 25 200 3512202 3512377 MAG: Nitrospira sp. isolate UBC3 chromosome blastn 379 198 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;