RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA694557" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA694557 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5776722 5776722 PRJNA694557_P_NODE_14945_length_336_cov_2.068441_g14725_i0 PRJNA694557 14945 336 2.068441 6.94996176 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 54.7 0.009   NTclustered gi|2874253678|emb|OY969112.1| 171953 g14725 i0 100 0.169642857142857 29 0 9 0 255 283 642577 642605 MAG: uncultured Acidobacteriota bacterium isolate MFD04212.bin.1.16 genome assembly, chromosome: 1 blastn 57 54.7 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
5776740 5776740 PRJNA694557_P_NODE_15985_length_322_cov_14.044177_g15765_i0 PRJNA694557 15985 322 14.044177 45.22224994 Acidobacteriota bacterium 1978231 Bacteria Bacteria 486 6.989999999999999e-133   NTclustered gi|1958085512|gb|CP065000.1| 1978231 g15765 i0 96.284 1.00621118012422 296 11 92 0 5 300 648353 648648 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.078_cln chromosome, complete genome blastn 324 486 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
7557664 7557664 PRJNA694557_P_NODE_8306_length_485_cov_3.174757_g8086_i0 PRJNA694557 8306 485 3.174757 15.39757145 Bacteria 2 Bacteria Bacteria 603 1.0399999999999997e-167   NTclustered gi|2874253692|emb|OY969418.1| 171953 g8086 i0 89.117 542.00412371134 487 50 100 3 1 485 4233464 4233949 MAG: uncultured Acidobacteriota bacterium isolate MFD09212.bin.c.1 genome assembly, chromosome: 1 blastn 262872 603 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
16482601 16482601 PRJNA694557_P_NODE_7253_length_529_cov_2.815789_g7033_i0 PRJNA694557 7253 529 2.815789 14.89552381 Bacteria 2 Bacteria Bacteria 658 0   NTclustered gi|2874253677|emb|OY969111.1| 171953 g7033 i0 90.116 128.489603024575 516 38 96 10 1 507 715737 716248 MAG: uncultured Acidobacteriota bacterium isolate MFD01916.bin.c.3 genome assembly, chromosome: 1 blastn 67971 658 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
23626160 23626160 PRJNA694557_P_NODE_27299_length_197_cov_45.274194_g27079_i0 PRJNA694557 27299 197 45.274194 89.19016218 Pyrinomonadaceae bacterium 2283092 Bacteria Bacteria 185 1.61e-42   NTclustered gi|2874253710|emb|OY969475.1| 2283092 g27079 i0 93.548 134.46192893401 124 8 63 0 51 174 1822542 1822665 MAG: Pyrinomonadaceae bacterium isolate MFD01916.bin.c.1 genome assembly, chromosome: 1 blastn 26489 185 1 Bacteria   Pseudomonadati Acidobacteriota Blastocatellia Blastocatellales Pyrinomonadaceae   Pyrinomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;