RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 10 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA692200 · 10 ✖

analysis 1

  • blastn · 10 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1948882 1948882 PRJNA692200_S_NODE_4922_length_290_cov_649.443983_g4865_i0 PRJNA692200 4922 290 649.443983 1883.3875507 Philodina citrina 468664 Rotifera other_Eukaryota 289 1.88e-73   NTclustered gi|407227484|emb|FR856884.1| 468664 g4865 i0 90.783 15.8862068965517 217 18 74 2 4 219 2184 2399 Philodina citrina complete mitochondrial genome blastn 4607 289 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
3223780 3223780 PRJNA692200_S_NODE_3823_length_316_cov_5.988764_g3766_i0 PRJNA692200 3823 316 5.988764 18.92449424 Philodina citrina 468664 Rotifera other_Eukaryota 333 9.439999999999998e-87   NTclustered gi|407227484|emb|FR856884.1| 468664 g3766 i0 86.557 1.92088607594937 305 37 96 2 7 308 3490 3793 Philodina citrina complete mitochondrial genome blastn 607 333 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina
7051157 7051157 PRJNA692200_S_NODE_11226_length_212_cov_935.374233_g11169_i0 PRJNA692200 11226 212 935.374233 1982.99337396 Anomopus telphusae 338910 Rotifera other_Eukaryota 302 1.68e-77   NTclustered gi|72153665|gb|DQ089732.1| 338910 g11169 i0 100 76.8867924528302 163 0 77 0 4 166 934 1096 Anomopus telphusae 18S ribosomal RNA gene, complete sequence blastn 16300 302 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Anomopus Anomopus telphusae
10876569 10876569 PRJNA692200_S_NODE_10389_length_219_cov_1639.682353_g10332_i0 PRJNA692200 10389 219 1639.682353 3590.90435307 Anomopus telphusae 338910 Rotifera other_Eukaryota 315 2.2399999999999993e-81   NTclustered gi|72153665|gb|DQ089732.1| 338910 g10332 i0 100 77.6255707762557 170 0 78 0 47 216 1103 934 Anomopus telphusae 18S ribosomal RNA gene, complete sequence blastn 17000 315 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Anomopus Anomopus telphusae
12151791 12151791 PRJNA692200_S_NODE_13450_length_197_cov_1.013514_g13393_i0 PRJNA692200 13450 197 1.013514 1.99662258 Philodina sp. NPS-2005 317012 Rotifera other_Eukaryota 163 7.55e-36   NTclustered gi|62362199|gb|AY942839.1| 317012 g13393 i0 86.577 0.756345177664975 149 16 76 3 2 150 405 549 Philodina sp. NPS-2005 S14e ribosomal protein-like protein mRNA, complete cds blastn 149 163 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina sp. NPS-2005
14701871 14701871 PRJNA692200_S_NODE_4432_length_301_cov_3.988095_g4375_i0 PRJNA692200 4432 301 3.988095 12.00416595 Macrotrachela quadricornifera 104788 Rotifera other_Eukaryota 257 5.53e-64   NTclustered gi|402761761|gb|JX184012.1| 104788 g4375 i0 83.764 18.6744186046512 271 44 90 0 7 277 381 651 Macrotrachela quadricornifera isolate CR cytochrome c oxidase subunit 2 (COX2) gene, complete cds; mitochondrial blastn 5621 257 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Macrotrachela Macrotrachela quadricornifera
19799557 19799557 PRJNA692200_S_NODE_15796_length_184_cov_1.600000_g15739_i0 PRJNA692200 15796 184 1.6 2.944 Bdelloidea environmental sample 317506 Rotifera other_Eukaryota 337 3.869999999999999e-88   NTclustered gi|281323394|gb|GQ922299.1| 317506 g15739 i0 100 98.9347826086957 182 0 99 0 3 184 87 268 Uncultured bdelloid rotifer clone Rot_G_10H 18S ribosomal RNA gene, partial sequence blastn 18204 337 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria       Bdelloidea environmental sample
19799833 19799833 PRJNA692200_S_NODE_5396_length_281_cov_261.840517_g5339_i0 PRJNA692200 5396 281 261.840517 735.77185277 Rotaria rotatoria 231624 Rotifera other_Eukaryota 274 5.08e-69   NTclustered gi|270267490|ref|NC_013568.1| 231624 g5339 i0 88.546 16.4483985765125 227 24 80 2 49 274 2423 2198 Rotaria rotatoria mitochondrion, complete genome blastn 4622 274 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
20305659 20305659 PRJNA692200_S_NODE_19136_length_169_cov_1.716667_g19079_i0 PRJNA692200 19136 169 1.716667 2.90116723 Eurotatoria 2816136 Rotifera other_Eukaryota 279 5.95e-71   NTclustered gi|72153762|gb|DQ089743.1| 231624 g19079 i0 96.471 60.9171597633136 170 4 99 1 2 169 1990 2159 Rotaria rotatoria 28S ribosomal RNA gene, partial sequence blastn 10295 279 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria rotatoria
21075454 21075454 PRJNA692200_S_NODE_7857_length_245_cov_1988.219388_g7800_i0 PRJNA692200 7857 245 1988.219388 4871.1375006 Philodina citrina 468664 Rotifera other_Eukaryota 196 9.65e-46   NTclustered gi|407227484|emb|FR856884.1| 468664 g7800 i0 86.022 16.130612244898 186 22 74 4 18 199 9473 9658 Philodina citrina complete mitochondrial genome blastn 3952 196 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina citrina

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;