RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA692200 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13933225 13933225 PRJNA692200_S_NODE_1251_length_422_cov_889.206434_g1202_i0 PRJNA692200 1251 422 889.206434 3752.45115148 Pristionchus 54125 Nematoda Nematoda 106 3.08e-18   NTclustered gi|150984424|gb|EF634854.1| 54126 g1202 i0 91.026 12.3293838862559 78 7 18 0 125 202 572 495 Pristionchus pacificus small subunit ribosomal protein 8 (rps-8) mRNA, partial cds blastn 5203 106 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
22856660 22856660 PRJNA692200_S_NODE_4878_length_291_cov_8.115702_g4821_i0 PRJNA692200 4878 291 8.115702 23.61669282 Metazoa 33208 Nematoda Nematoda 65.8 3.46e-6   NTclustered gi|2445368477|ref|XM_003103930.2| 31234 g4821 i0 97.368 17.3127147766323 38 1 13 0 31 68 172 209 Caenorhabditis remanei uncharacterized protein (GCK72_011523), partial mRNA blastn 5038 65.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
25405742 25405742 PRJNA692200_S_NODE_7040_length_256_cov_3.463768_g6983_i0 PRJNA692200 7040 256 3.463768 8.86724608 Metazoa 33208 Nematoda Nematoda 100 8.19e-17   NTclustered gi|270309007|dbj|AB500146.1| 6326 g6983 i0 93.939 24.4296875 66 4 26 0 1 66 1071 1136 Bursaphelenchus xylophilus Bx_act1 mRNA for actin, complete cds blastn 6254 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;