RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA692200 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14701609 14701609 PRJNA692200_S_NODE_14312_length_191_cov_5.035211_g14255_i0 PRJNA692200 14312 191 5.035211 9.61725301 Mycoplasmatota bacterium WC30 3075149 Bacteria Bacteria 78.7 2.71e-10   NTclustered gi|2877983046|gb|CP134495.1| 3075149 g14255 i0 94.118 21.0785340314136 51 3 27 0 29 79 240248 240298 Mycoplasmatota bacterium WC30 chromosome, complete genome blastn 4026 78.7 1 Bacteria   Bacillati Mycoplasmatota         Mycoplasmatota bacterium WC30
21075516 21075516 PRJNA692200_S_NODE_9657_length_227_cov_1.780899_g9600_i0 PRJNA692200 9657 227 1.780899 4.04264073 uncultured Mycoplasmatota bacterium 658143 Bacteria Bacteria 180 8.89e-41   NTclustered gi|2187163482|emb|OV788640.1| 658143 g9600 i0 81.614 393.022026431718 223 36 98 5 5 226 373699 373481 uncultured Tenericutes bacterium isolate min17_bin11 genome assembly, chromosome: 1 blastn 89216 180 1 Bacteria   Bacillati Mycoplasmatota         uncultured Mycoplasmatota bacterium
21581466 21581466 PRJNA692200_S_NODE_13657_length_195_cov_10.554795_g13600_i0 PRJNA692200 13657 195 10.554795 20.58185025 root 1 Root_unresolved Root_unresolved 52.8 0.017   NTclustered gi|1851159111|gb|CP054256.1| 2102 g13600 i0 100 13.7846153846154 28 0 14 0 57 84 261472 261445 Mycoplasma mycoides strain T1/44 GP chromosome, complete genome blastn 2688 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;