RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_phylum = "Evosea"

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tax_superkingdom 1

tax_phylum 1

  • Evosea · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
672898 672898 PRJNA692200_S_NODE_4101_length_309_cov_3.088462_g4044_i0 PRJNA692200 4101 309 3.088462 9.54334758 Coremiostelium polycephalum 142831 Evosea other_Eukaryota 93.5 1.7e-14   NTclustered gi|85062629|gb|DQ340387.1| 142831 g4044 i0 88.312 25.9805825242718 77 9 25 0 103 179 12524 12448 Dictyostelium polycephalum 17S ribosomal RNA, 5.8S ribosomal RNA, and 26S ribosomal RNA genes, complete sequence blastn 8028 93.5 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales   Coremiostelium Coremiostelium polycephalum
8325717 8325717 PRJNA692200_S_NODE_13887_length_194_cov_2.179310_g13830_i0 PRJNA692200 13887 194 2.17931 4.2278614 Heterostelium album 2086695 Evosea other_Eukaryota 75 3.57e-9   NTclustered gi|1160561078|ref|XM_020578754.1| 670386 g13830 i0 93.878 0.860824742268041 49 3 25 0 7 55 181 229 Polysphondylium pallidum PN500 ubiquitin (ubqD), partial mRNA blastn 167 75 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
9601158 9601158 PRJNA692200_S_NODE_18528_length_171_cov_2.827869_g18471_i0 PRJNA692200 18528 171 2.827869 4.83565599 Dictyostelium purpureum 5786 Evosea other_Eukaryota 163 6.34e-36   NTclustered gi|330842931|ref|XM_003293373.1| 5786 g18471 i0 93.578 35.0058479532164 109 7 64 0 59 167 1089 981 Dictyostelium purpureum uncharacterized protein (DICPUDRAFT_90232), partial mRNA blastn 5986 163 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
10107958 10107958 PRJNA692200_S_NODE_688_length_475_cov_137.762911_g650_i0 PRJNA692200 688 475 137.762911 654.37382725 Arcyria 137620 Evosea other_Eukaryota 756 0   NTclustered gi|24711448|gb|AY145523.1| 137621 g650 i0 98.821 81.6252631578947 424 5 89 0 50 473 1064 641 Arcyria cinerea 18S ribosomal RNA gene, partial sequence blastn 38772 756 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Trichiida Trichiidae Arcyria Arcyria cinerea
20305629 20305629 PRJNA692200_S_NODE_10256_length_221_cov_1.790698_g10199_i0 PRJNA692200 10256 221 1.790698 3.95744258 Eumycetozoa 142796 Evosea other_Eukaryota 281 2.29e-71   NTclustered gi|2524154319|gb|OR186216.1| 226008 g10199 i0 98.734 73.5158371040724 158 2 71 0 64 221 887 1044 Fuligo gyrosa strain IAAM-W0002 small subunit ribosomal RNA gene, partial sequence blastn 16247 281 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Physariida Physaraceae Fuligo Fuligo gyrosa
22350265 22350265 PRJNA692200_S_NODE_5698_length_276_cov_4.061674_g5641_i0 PRJNA692200 5698 276 4.061674 11.21022024 Heterostelium album 2086695 Evosea other_Eukaryota 54.7 0.007   NTclustered gi|1160555684|ref|XM_020573667.1| 670386 g5641 i0 96.875 0.536231884057971 32 1 12 0 15 46 1694 1725 Polysphondylium pallidum PN500 sumo-activating enzyme subunit 2 (uba2), partial mRNA blastn 148 54.7 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;