RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_phylum = "Chytridiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA692200 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3731128 3731128 PRJNA692200_S_NODE_9843_length_225_cov_3.090909_g9786_i0 PRJNA692200 9843 225 3.090909 6.95454525 Eukaryota 2759 Fungi Fungi 233 6.659999999999999e-57   NTclustered gi|311235598|ref|NG_027613.1| 110093 g9786 i0 91.228 88.4755555555556 171 15 76 0 28 198 2677 2847 Polychytrium aggregatum JEL 109 28S rRNA gene, partial sequence; from reference material blastn 19907 233 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Polychytriales   Polychytrium Polychytrium aggregatum
13426456 13426456 PRJNA692200_S_NODE_18031_length_173_cov_3.000000_g17974_i0 PRJNA692200 18031 173 3 5.19 Phlyctochytrium planicorne 261098 Fungi Fungi 78.7 2.4e-10   NTclustered gi|1866582700|gb|MT730875.1| 261098 g17974 i0 95.833 13.271676300578 48 2 28 0 60 107 2906 2953 Phlyctochytrium planicorne isolate JEL0894 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 2296 78.7 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytridiaceae Phlyctochytrium Phlyctochytrium planicorne
19030974 19030974 PRJNA692200_S_NODE_8055_length_243_cov_5.036082_g7998_i0 PRJNA692200 8055 243 5.036082 12.23767926 Rhizophydium 60186 Fungi Fungi 124 4.579999999999999e-24   NTclustered gi|1780004527|gb|MN759467.1| 2012212 g7998 i0 89 31.8724279835391 100 11 41 0 1 100 14 113 Chytridiomycota sp. isolate OAS2 large subunit ribosomal RNA gene, partial sequence blastn 7745 124 1 Eukaryota Opisthokonta Fungi Chytridiomycota         Chytridiomycota sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;