RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA692200 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
672939 672939 PRJNA692200_S_NODE_5321_length_283_cov_2.846154_g5264_i0 PRJNA692200 5321 283 2.846154 8.05461582 Sarcocystis zamani 137009 SAR_Eukaryotes SAR_Eukaryotes 58.4 5.61e-4   NTclustered gi|1005651880|gb|KU244521.1| 137009 g5264 i0 94.737 11.8374558303887 38 1 13 1 247 283 3304 3267 Sarcocystis zamani voucher BJ no.1 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3350 58.4 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Sarcocystis Sarcocystis zamani
5776064 5776064 PRJNA692200_S_NODE_1265_length_421_cov_969.602151_g1216_i0 PRJNA692200 1265 421 969.602151 4082.02505571 Eimeria mitis 44415 SAR_Eukaryotes SAR_Eukaryotes 122 3.049999999999999e-23   NTclustered gi|916497858|ref|XM_013494305.1| 44415 g1216 i0 97.222 0.171021377672209 72 2 17 0 26 97 345 416 Eimeria mitis uncharacterized protein (EMH_0029470), partial mRNA blastn 72 122 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria mitis
12152059 12152059 PRJNA692200_S_NODE_3590_length_322_cov_2.527473_g3533_i0 PRJNA692200 3590 322 2.527473 8.13846306 Plasmodium coatneyi 208452 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.008   NTclustered gi|1139863048|ref|XM_020059306.1| 208452 g3533 i0 100 0.437888198757764 29 0 9 0 192 220 3823 3795 Plasmodium coatneyi Uncharacterized protein partial mRNA blastn 141 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium coatneyi
15975444 15975444 PRJNA692200_S_NODE_18673_length_171_cov_1.229508_g18616_i0 PRJNA692200 18673 171 1.229508 2.10245868 Neospora caninum 29176 SAR_Eukaryotes SAR_Eukaryotes 95.3 2.35e-15   NTclustered gi|820693004|tpe|LN714485.1| 572307 g18616 i0 86.364 1.47953216374269 88 10 51 2 28 114 854667 854581 TPA_asm: Neospora caninum Liverpool, chromosome chrX, complete genome blastn 253 95.3 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Sarcocystidae Neospora Neospora caninum
19799600 19799600 PRJNA692200_S_NODE_17756_length_174_cov_4.152000_g17699_i0 PRJNA692200 17756 174 4.152 7.22448 Eimeria necatrix 51315 SAR_Eukaryotes SAR_Eukaryotes 67.6 5.23e-7   NTclustered gi|921123390|ref|XM_013580856.1| 51315 g17699 i0 93.333 4.01149425287356 45 3 26 0 48 92 1112 1068 Eimeria necatrix hypothetical protein, conserved partial mRNA blastn 698 67.6 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria necatrix

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;