RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA692200 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6283275 6283275 PRJNA692200_S_NODE_8125_length_242_cov_2262.067358_g8068_i0 PRJNA692200 8125 242 2262.067358 5474.20300636 Cetobacterium 180162 Bacteria Bacteria 366 6.85e-97   NTclustered gi|2865368125|gb|CP122294.1| 188913 g8068 i0 98.551 410.706611570248 207 3 86 0 1 207 277866 278072 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 99391 366 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
25405704 25405704 PRJNA692200_S_NODE_13500_length_196_cov_4.666667_g13443_i0 PRJNA692200 13500 196 4.666667 9.14666732 Cetobacterium 180162 Bacteria Bacteria 311 2.53e-80   NTclustered gi|2865364693|gb|CP122286.1| 188913 g13443 i0 98.851 3.70918367346939 174 2 89 0 23 196 53565 53738 Cetobacterium somerae strain MSU49 plasmid p49_t7 blastn 727 311 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
25405748 25405748 PRJNA692200_S_NODE_8620_length_237_cov_7.159574_g8563_i0 PRJNA692200 8620 237 7.159574 16.96819038 Cetobacterium 180162 Bacteria Bacteria 366 6.69e-97   NTclustered gi|2865368125|gb|CP122294.1| 188913 g8563 i0 100 439.911392405063 198 0 84 0 1 198 278953 279150 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 104259 366 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;