RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA692200 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1948688 1948688 PRJNA692200_S_NODE_18002_length_173_cov_4.129032_g17945_i0 PRJNA692200 18002 173 4.129032 7.14322536 uncultured Planctomycetaceae bacterium 100233 Bacteria Bacteria 202 1.3599999999999999e-47   NTclustered gi|2874253757|emb|OY969698.1| 100233 g17945 i0 88.166 31.7861271676301 169 20 98 0 1 169 4422713 4422881 MAG: uncultured Planctomycetaceae bacterium isolate MFD00082.bin.2.56 genome assembly, chromosome: 1 blastn 5499 202 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae   uncultured Planctomycetaceae bacterium
3223539 3223539 PRJNA692200_S_NODE_15243_length_186_cov_5.153285_g15186_i0 PRJNA692200 15243 186 5.153285 9.5851101 Aureliella sp. 2795609 Bacteria Bacteria 206 1.15e-48   NTclustered gi|2626244095|emb|OY829846.1| 2795609 g15186 i0 86.957 46.1021505376344 184 23 99 1 1 184 5640497 5640679 MAG: Aureliella sp. isolate e39ea203-26a8-405f-9782-9267d5c1de48 genome assembly, chromosome: 1 blastn 8575 206 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales Pirellulaceae Aureliella Aureliella sp.
12152002 12152002 PRJNA692200_S_NODE_23410_length_155_cov_2.358491_g23353_i0 PRJNA692200 23410 155 2.358491 3.65566105 Limnoglobus roseus 2598579 Bacteria Bacteria 150 4.3899999999999996e-32   NTclustered gi|1733446852|gb|CP042425.1| 2598579 g23353 i0 86.232 58.2064516129032 138 19 89 0 13 150 2956272 2956135 Limnoglobus roseus strain PX52 chromosome, complete genome blastn 9022 150 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae Limnoglobus Limnoglobus roseus
24898827 24898827 PRJNA692200_S_NODE_11240_length_212_cov_9.282209_g11183_i0 PRJNA692200 11240 212 9.282209 19.67828308 Candidatus Kuenenia stuttgartensis 174633 Bacteria Bacteria 128 3.0099999999999997e-25   NTclustered gi|91199943|emb|CT573071.1| 174633 g11183 i0 78.095 25.25 210 40 97 6 7 212 838131 838338 Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5) blastn 5353 128 1 Bacteria PVC group Pseudomonadati Planctomycetota Candidatus Brocadiia Candidatus Brocadiales Candidatus Brocadiaceae Candidatus Kuenenia Candidatus Kuenenia stuttgartensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;