RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA692200" and tax_clade = "CRuMs"

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tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA692200 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8326103 8326103 PRJNA692200_S_NODE_7887_length_245_cov_6.102041_g7830_i0 PRJNA692200 7887 245 6.102041 14.95000045 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 193 1.25e-44   NTclustered gi|300078503|gb|GU001165.1| 238746 g7830 i0 81.176 70.7918367346939 255 35 99 9 2 245 1060 1312 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17344 193 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
18524536 18524536 PRJNA692200_S_NODE_1215_length_424_cov_1070.512000_g1167_i0 PRJNA692200 1215 424 1070.512 4538.97088 Diphylleia rotans 190327 Root_unresolved Root_unresolved 97.1 1.86e-15   NTclustered gi|1200177731|gb|MF039365.1| 190327 g1167 i0 92.537 16.4858490566038 67 5 16 0 170 236 4253 4319 Diphylleia rotans isolate D_NIES3764 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6990 97.1 1 Eukaryota CRuMs         Collodictyonidae Diphylleia Diphylleia rotans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;