RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA691918" and tax_kingdom = "Bacillati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA691918 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1179213 1179213 PRJNA691918_S_NODE_181_length_199_cov_20.964286_g180_i0 PRJNA691918 181 199 20.964286 41.71892914 Bacillales 1385 Bacteria Bacteria 364 1.9499999999999995e-96   NTclustered gi|1176884116|gb|CP020463.1| 1282 g180 i0 100 545.768844221105 197 0 99 0 1 197 838275 838079 Staphylococcus epidermidis strain 1457 chromosome, complete genome blastn 108608 364 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus epidermidis
8325606 8325606 PRJNA691918_S_NODE_227_length_191_cov_7.587500_g226_i0 PRJNA691918 227 191 7.5875 14.492125 Anaerococcus prevotii 33034 Bacteria Bacteria 309 8.83e-80   NTclustered gi|256797400|gb|CP001708.1| 525919 g226 i0 96.277 679.324607329843 188 7 98 0 4 191 83350 83537 Anaerococcus prevotii DSM 20548, complete genome blastn 129751 309 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Anaerococcus Anaerococcus prevotii
14701478 14701478 PRJNA691918_S_NODE_412_length_157_cov_3.055556_g411_i0 PRJNA691918 412 157 3.055556 4.79722292 Peptoniphilus genitalis 3036303 Bacteria Bacteria 250 4.28e-62   NTclustered gi|2246887130|gb|CP097885.1| 3036303 g411 i0 95.513 114.286624203822 156 7 99 0 1 156 292295 292450 Peptoniphilus genitalis strain SAHP1 chromosome, complete genome blastn 17943 250 1 Bacteria   Bacillati Bacillota Tissierellia Tissierellales Peptoniphilaceae Peptoniphilus Peptoniphilus genitalis
24898766 24898766 PRJNA691918_S_NODE_380_length_166_cov_9.948148_g379_i0 PRJNA691918 380 166 9.948148 16.51392568 uncultured Chroococcidiopsis sp. 259957 Bacteria Bacteria 265 1.64e-66   NTclustered gi|225696259|gb|FJ805926.1| 259957 g379 i0 95.758 139.975903614458 165 6 99 1 3 166 1901 1737 Uncultured Chroococcidiopsis sp. clone AS3_2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 23236 265 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Chroococcidiopsidales Chroococcidiopsidaceae Chroococcidiopsis uncultured Chroococcidiopsis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;