RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA691918" and tax_clade = "CRuMs"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA691918 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3223377 3223377 PRJNA691918_S_NODE_183_length_198_cov_18563.514970_g182_i0 PRJNA691918 183 198 18563.51497 36755.7596406 uncultured Micronuclearia 1595896 Root_unresolved Root_unresolved 226 9.56e-55   NTclustered gi|1516250890|gb|MK177607.1| 1595896 g182 i0 94 76.2929292929293 150 8 75 1 1 149 916 1065 Uncultured Micronuclearia clone DDI50.fa small subunit ribosomal RNA gene, partial sequence blastn 15106 226 1 Eukaryota CRuMs       Rigifilida   Micronuclearia uncultured Micronuclearia
7051111 7051111 PRJNA691918_S_NODE_246_length_187_cov_19609.410256_g245_i0 PRJNA691918 246 187 19609.410256 36669.59717872 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 178 2.53e-40   NTclustered gi|300078503|gb|GU001165.1| 238746 g245 i0 96.296 59.7219251336898 108 4 58 0 31 138 1234 1341 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11168 178 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;