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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA690592 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7049627 7049627 PRJNA690592_S_NODE_144866_length_281_cov_1.480769_g143852_i0 PRJNA690592 144866 281 1.480769 4.16096089 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 106 1.96e-18   NTclustered gi|292559443|ref|NC_013986.1| 5778 g143852 i0 87.912 0.647686832740214 91 10 32 1 1 91 19957 19868 Hartmannella vermiformis mitochondrion, complete genome blastn 182 106 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
7557007 7557007 PRJNA690592_S_NODE_76346_length_366_cov_1.979522_g75332_i0 PRJNA690592 76346 366 1.979522 7.24505052 Echinamoeba 136449 Tubulinea other_Eukaryota 586 7.699999999999998e-163   NTclustered gi|165968562|gb|EU377602.1| 136450 g75332 i0 95.628 70.8032786885246 366 15 100 1 1 366 388 24 Echinamoeba exundans strain CRIB40 18S ribosomal RNA gene, partial sequence blastn 25914 586 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
10876133 10876133 PRJNA690592_S_NODE_88249_length_344_cov_4.904059_g87235_i0 PRJNA690592 88249 344 4.904059 16.86996296 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 636 7.059999999999998e-178   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g87235 i0 100 81.2761627906977 344 0 100 0 1 344 380 37 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 27959 636 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
13425318 13425318 PRJNA690592_S_NODE_210751_length_242_cov_2.485207_g209737_i0 PRJNA690592 210751 242 2.485207 6.01420094 Amoeba leningradensis 160820 Tubulinea other_Eukaryota 219 2.0299999999999993e-52   NTclustered gi|17897590|emb|AJ314605.1| 160820 g209737 i0 83.133 37.9214876033058 249 33 100 9 1 242 1363 1609 Amoeba leningradensis partial 16S rRNA gene, strain CCAP 1503/6 blastn 9177 219 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba leningradensis
13425563 13425563 PRJNA690592_S_NODE_40351_length_482_cov_33.630807_g39337_i0 PRJNA690592 40351 482 33.630807 162.10048974 Rhizamoeba saxonica 200886 Tubulinea other_Eukaryota 154 1.2499999999999998e-32   NTclustered gi|300078497|gb|GU001159.1| 200886 g39337 i0 82.011 42.2406639004149 189 27 38 7 298 482 4309 4124 Rhizamoeba saxonica 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 20360 154 1 Eukaryota Amoebozoa   Tubulinea Elardia Leptomyxida Flabellulidae Rhizamoeba Rhizamoeba saxonica
18523633 18523633 PRJNA690592_S_NODE_29155_length_559_cov_2.314815_g28156_i0 PRJNA690592 29155 559 2.314815 12.93981585 Copromyxa protea 931554 Tubulinea other_Eukaryota 621 3.3499999999999986e-173   NTclustered gi|508737347|dbj|AB766053.1| 931554 g28156 i0 87.64 40.0232558139535 534 66 96 0 24 557 576 43 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 22373 621 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
21074036 21074036 PRJNA690592_S_NODE_220757_length_217_cov_5.875000_g219743_i0 PRJNA690592 220757 217 5.875 12.74875 Nolandella sp. ATCC PRA-27 498006 Tubulinea other_Eukaryota 318 1.71e-82   NTclustered gi|167859744|gb|EU273453.1| 498006 g219743 i0 93.119 105.751152073733 218 13 100 2 1 217 352 136 Nolandella sp. ATCC PRA-27 clone 2 actin gene, partial cds blastn 22948 318 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Nolandella Nolandella sp. ATCC PRA-27
21581160 21581160 PRJNA690592_S_NODE_145617_length_280_cov_2.594203_g144603_i0 PRJNA690592 145617 280 2.594203 7.2637684 Saccamoeba 136463 Tubulinea other_Eukaryota 291 5.02e-74   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g144603 i0 98.193 34.0107142857143 166 3 59 0 115 280 1808 1643 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 9523 291 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
22349342 22349342 PRJNA690592_S_NODE_79698_length_359_cov_3.290210_g78684_i0 PRJNA690592 79698 359 3.29021 11.8118539 Saccamoeba sp. W187G 1215626 Tubulinea other_Eukaryota 658 0   NTclustered gi|399764209|gb|JQ271720.1| 1215626 g78684 i0 99.721 73.3983286908078 359 1 100 0 1 359 949 591 Saccamoeba sp. W187G 18S ribosomal RNA gene, partial sequence blastn 26350 658 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. W187G
24130964 24130964 PRJNA690592_S_NODE_47459_length_449_cov_4.095745_g46445_i0 PRJNA690592 47459 449 4.095745 18.38989505 Saccamoeba 136463 Tubulinea other_Eukaryota 821 0   NTclustered gi|399764206|gb|JQ271717.1| 1215623 g46445 i0 99.776 96.0178173719376 447 1 99 0 3 449 1201 1647 Saccamoeba sp. DP7 18S ribosomal RNA gene, partial sequence blastn 43112 821 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba sp. DP7
24897867 24897867 PRJNA690592_S_NODE_26220_length_588_cov_3.308738_g25228_i0 PRJNA690592 26220 588 3.308738 19.45537944 Copromyxa protea 931554 Tubulinea other_Eukaryota 555 3.6299999999999997e-153   NTclustered gi|508737347|dbj|AB766053.1| 931554 g25228 i0 83.871 4.14625850340136 589 87 99 7 4 588 753 1337 Copromyxa protea EFL mRNA for elongation factor-like protein, complete cds, strain: ATCC PRA-324 blastn 2438 555 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;