RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Spirochaetota"

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tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690592 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7050007 7050007 PRJNA690592_S_NODE_192786_length_249_cov_0.875000_g191772_i0 PRJNA690592 192786 249 0.875 2.17875 Borreliella americana 478807 Bacteria Bacteria 54.7 0.006   NTclustered gi|2591850341|gb|CP132449.1| 478807 g191772 i0 96.875 0.1285140562249 32 1 13 0 45 76 538561 538592 Borreliella americana strain SCW30h chromosome, complete genome blastn 32 54.7 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Borreliaceae Borreliella Borreliella americana
10875528 10875528 PRJNA690592_S_NODE_205989_length_244_cov_1.280702_g204975_i0 PRJNA690592 205989 244 1.280702 3.12491288 Leptospira kmetyi 408139 Bacteria Bacteria 52.8 0.022   NTclustered gi|1511928193|gb|CP033615.1| 408139 g204975 i0 100 0.114754098360656 28 0 11 0 43 70 345062 345089 Leptospira kmetyi strain LS 001/16 chromosome 2, complete sequence blastn 28 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Leptospirales Leptospiraceae Leptospira Leptospira kmetyi
13932932 13932932 PRJNA690592_S_NODE_160791_length_268_cov_2.261538_g159777_i0 PRJNA690592 160791 268 2.261538 6.06092184 Brachyspira 29521 Bacteria Bacteria 52.8 0.025   NTclustered gi|2021755399|gb|CP046930.1| 159 g159777 i0 100 0.940298507462687 28 0 10 0 84 111 1373687 1373660 Brachyspira hyodysenteriae strain BHZ375 chromosome, complete genome blastn 252 52.8 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Brachyspirales Brachyspiraceae Brachyspira Brachyspira hyodysenteriae
23623631 23623631 PRJNA690592_S_NODE_1179_length_1939_cov_9.383708_g938_i1 PRJNA690592 1179 1939 9.383708 181.95009812 Sphaerochaetaceae bacterium 2791017 Bacteria Bacteria 71.3 5.52e-7   NTclustered gi|2814788357|emb|OY782871.2| 2791017 g938 i1 89.655 0.0299123259412068 58 3 3 1 122 179 514666 514720 MAG: Sphaerochaetaceae bacterium isolate a9bcfc89-315c-4f53-91f9-1ff9c53e3a1f genome assembly, chromosome: 1 blastn 58 71.3 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Sphaerochaetaceae   Sphaerochaetaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;