RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 6 ✖

bioproject 1

  • PRJNA690592 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7049961 7049961 PRJNA690592_S_NODE_187526_length_251_cov_0.865169_g186512_i0 PRJNA690592 187526 251 0.865169 2.17157419 Chondrus crispus 2769 Rhodophyta other_Eukaryota 154 6.06e-33   NTclustered gi|546322529|ref|XM_005717765.1| 2769 g186512 i0 82.065 1.50996015936255 184 29 73 4 23 204 517 336 Chondrus crispus 60S ribosomal protein L15 (CHC_T00010309001) mRNA, partial cds blastn 379 154 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
7050346 7050346 PRJNA690592_S_NODE_38066_length_495_cov_10.191943_g37055_i0 PRJNA690592 38066 495 10.191943 50.45011785 Pyropia haitanensis 1262161 Rhodophyta other_Eukaryota 315 5.58e-81   NTclustered gi|1026716609|gb|KU179277.1| 1262161 g37055 i0 86.833 54.1050505050505 281 37 57 0 215 495 494 214 Pyropia haitanensis calmodulin 1 mRNA, complete cds blastn 26782 315 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia haitanensis
14700738 14700738 PRJNA690592_S_NODE_49172_length_442_cov_7.273713_g48158_i0 PRJNA690592 49172 442 7.273713 32.14981146 Erythrolobus australicus 1077150 Rhodophyta other_Eukaryota 167 1.46e-36   NTclustered gi|1812772013|gb|MT117937.1| 1077150 g48158 i0 87.075 29.9004524886878 147 19 33 0 1 147 3865 3719 Erythrolobus australicus strain CCMP3124 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13216 167 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Erythrolobus Erythrolobus australicus
15973985 15973985 PRJNA690592_S_NODE_181953_length_253_cov_2.116667_g180939_i0 PRJNA690592 181953 253 2.116667 5.35516751 Colaconema proskaueri 209636 Rhodophyta other_Eukaryota 187 6.0299999999999984e-43   NTclustered gi|545749326|gb|KF364496.1| 209636 g180939 i0 83.099 98.7391304347826 213 28 83 8 45 253 1035 827 Colaconema proskaueri voucher GWSC008 cytochrome oxidase subunit 1 (COI) gene, partial cds; mitochondrial blastn 24981 187 1 Eukaryota     Rhodophyta Florideophyceae Colaconematales Colaconemataceae Colaconema Colaconema proskaueri
17248566 17248566 PRJNA690592_S_NODE_103974_length_322_cov_8.333333_g102960_i0 PRJNA690592 103974 322 8.333333 26.83333226 Thorea hispida 202687 Rhodophyta other_Eukaryota 73.1 2.32e-8   NTclustered gi|2209666457|gb|MN909954.1| 202687 g102960 i0 97.619 0.518633540372671 42 1 13 0 122 163 43294 43253 Thorea hispida chloroplast, complete genome blastn 167 73.1 1 Eukaryota     Rhodophyta Florideophyceae Thoreales Thoreaceae Thorea Thorea hispida
24897296 24897296 PRJNA690592_S_NODE_152220_length_275_cov_1.524752_g151206_i0 PRJNA690592 152220 275 1.524752 4.193068 Erythrolobus coxiae 362235 Rhodophyta other_Eukaryota 69.4 2.51e-7   NTclustered gi|2222306051|ref|NC_062401.1| 362235 g151206 i0 97.5 0.963636363636364 40 1 15 0 193 232 78816 78777 Erythrolobus coxiae strain CCAP 1393/6 mitochondrion, complete genome blastn 265 69.4 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Erythrolobus Erythrolobus coxiae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;