RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA690592 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4499221 4499221 PRJNA690592_S_NODE_168944_length_262_cov_1.984127_g167930_i0 PRJNA690592 168944 262 1.984127 5.19841274 Holomastigotes sp. 3086161 Parabasalia other_Eukaryota 60.2 1.43e-4   NTclustered gi|2637867514|gb|OR995879.1| 3086161 g167930 i0 89.362 0.179389312977099 47 5 18 0 1 47 2054 2008 Holomastigotes sp. clone Hsjo_Para28S_sq53sz61 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 47 60.2 1 Eukaryota Metamonada   Parabasalia   Spirotrichonymphida Holomastigotoididae Holomastigotes Holomastigotes sp.
8324402 8324402 PRJNA690592_S_NODE_186507_length_251_cov_0.865169_g185493_i0 PRJNA690592 186507 251 0.865169 2.17157419 Trichomonas vaginalis 5722 Parabasalia other_Eukaryota 54.7 0.006   NTclustered gi|123449826|ref|XM_001313628.1| 412133 g185493 i0 96.875 0.796812749003984 32 1 13 0 159 190 922 953 Trichomonas vaginalis G3 experimental autoimmune prostatitis antigen 2-related family (TVAGG3_0762120), partial mRNA blastn 200 54.7 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
22349144 22349144 PRJNA690592_S_NODE_50398_length_438_cov_1.230137_g49384_i0 PRJNA690592 50398 438 1.230137 5.38800006 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.7 0.012   NTclustered gi|2806459186|ref|XM_068503837.1| 1144522 g49384 i0 96.97 0.0753424657534247 33 0 8 1 155 187 581 550 Tritrichomonas foetus uncharacterized protein (TRFO_24591), partial mRNA blastn 33 54.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;