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contig_metadata

31 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690592 · 31 ✖

analysis 1

  • blastn · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
671610 671610 PRJNA690592_S_NODE_25421_length_597_cov_1.809160_g24429_i0 PRJNA690592 25421 597 1.80916 10.8006852 Caenorhabditis briggsae 6238 Nematoda Nematoda 100 2.08e-16   NTclustered gi|268554006|ref|XM_002634945.1| 6238 g24429 i0 80.142 1.15912897822446 141 22 23 5 459 596 429 292 Caenorhabditis briggsae Protein CBG13531 (CBG13531), partial mRNA blastn 692 100 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
671946 671946 PRJNA690592_S_NODE_68501_length_383_cov_19.512903_g67487_i0 PRJNA690592 68501 383 19.512903 74.73441849 Pristionchus bulgaricus 1486442 Nematoda Nematoda 167 1.25e-36   NTclustered gi|610559349|gb|KJ395523.1| 1486442 g67487 i0 81.081 12.2480417754569 222 28 56 11 110 324 263 49 Pristionchus bulgaricus isolate sp18 ribosomal protein (rps-20) gene, partial cds blastn 4691 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus bulgaricus
1947281 1947281 PRJNA690592_S_NODE_1802_length_1691_cov_3.559951_g1533_i0 PRJNA690592 1802 1691 3.559951 60.19877141 Caenorhabditis briggsae 6238 Nematoda Nematoda 62.1 2.89e-4   NTclustered gi|2158432833|ref|XM_002643608.2| 6238 g1533 i0 94.872 0.023063276167948 39 2 2 0 174 212 668 630 Caenorhabditis briggsae Protein CBR-COL-187 (Cbr-col-187), partial mRNA blastn 39 62.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
1947491 1947491 PRJNA690592_S_NODE_206722_length_244_cov_0.900585_g205708_i0 PRJNA690592 206722 244 0.900585 2.1974274 Caenorhabditis briggsae 6238 Nematoda Nematoda 52.8 0.022   NTclustered gi|11094894|gb|AC084444.1|AC084444 6238 g205708 i0 100 0.229508196721311 28 0 11 0 161 188 65589 65616 Caenorhabditis briggsae cosmid CB014E04, complete sequence blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
1948051 1948051 PRJNA690592_S_NODE_82402_length_354_cov_4.153025_g81388_i0 PRJNA690592 82402 354 4.153025 14.7017085 Pristionchus sp. 13 RS5231 452807 Nematoda Nematoda 78.7 5.52e-10   NTclustered gi|150982219|gb|EF634698.1| 452807 g81388 i0 86.957 0.985875706214689 69 9 19 0 286 354 71 3 Pristionchus sp. 13 RS5231 large subunit ribosomal protein 29 (rpl-29) mRNA, complete cds blastn 349 78.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 13 RS5231
3730868 3730868 PRJNA690592_S_NODE_34583_length_517_cov_25.058559_g33576_i0 PRJNA690592 34583 517 25.058559 129.55275003 Opisthokonta 33154 Nematoda Nematoda 318 4.5199999999999983e-82   NTclustered gi|268537031|ref|XM_002633606.1| 6238 g33576 i0 82.418 69.2340425531915 364 64 70 0 83 446 418 55 Caenorhabditis briggsae Protein CBR-RPS-23 (Cbr-rps-23), partial mRNA blastn 35794 320 0.99375 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
4499689 4499689 PRJNA690592_S_NODE_31484_length_540_cov_6.349036_g30478_i0 PRJNA690592 31484 540 6.349036 34.2847944 Diplogasteroides magnus 560213 Nematoda Nematoda 372 3.59e-98   NTclustered gi|256709249|gb|GQ422277.1| 560213 g30478 i0 83.979 71.2537037037037 387 62 72 0 69 455 435 49 Diplogasteroides magnus small subunit ribosomal protein 14 (rps-14) mRNA, partial cds blastn 38477 372 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteroididae Diplogasteroides Diplogasteroides magnus
5774383 5774383 PRJNA690592_S_NODE_115985_length_308_cov_3.319149_g114971_i0 PRJNA690592 115985 308 3.319149 10.22297892 Caenorhabditis elegans 6239 Nematoda Nematoda 237 7.39e-58   NTclustered gi|1972263928|ref|NM_171139.8| 6239 g114971 i0 81.107 36.3344155844156 307 49 100 4 3 308 546 844 Caenorhabditis elegans Ubiquitin-related (ubq-1), mRNA blastn 11191 237 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
7050362 7050362 PRJNA690592_S_NODE_39966_length_484_cov_31.111922_g38953_i0 PRJNA690592 39966 484 31.111922 150.58170248 Rhabditoides inermis 96661 Nematoda Nematoda 270 1.1999999999999998e-67   NTclustered gi|256709332|gb|GQ422341.1| 96661 g38953 i0 80.737 15.5061983471074 353 62 72 6 64 413 384 35 Rhabditoides inermis large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 7505 270 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Rhabditoides Rhabditoides inermis
7050447 7050447 PRJNA690592_S_NODE_51606_length_433_cov_2.566667_g50592_i0 PRJNA690592 51606 433 2.566667 11.11366811 Bursaphelenchus xylophilus 6326 Nematoda Nematoda 220 1.08e-52   NTclustered gi|567773431|gb|KF739066.1| 6326 g50592 i0 82.422 9.22632794457275 256 41 59 4 105 358 266 13 Bursaphelenchus xylophilus isolate ZJZS FTT-2 protein mRNA, complete cds blastn 3995 220 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Bursaphelenchus Bursaphelenchus xylophilus
7050628 7050628 PRJNA690592_S_NODE_76306_length_366_cov_2.262799_g75292_i0 PRJNA690592 76306 366 2.262799 8.28184434 Oigolaimella sp. VS-2014 1538701 Nematoda Nematoda 259 1.91e-64   NTclustered gi|675119001|gb|KJ877380.1| 1538701 g75292 i0 81.847 13.0901639344262 314 51 85 6 1 311 346 36 Oigolaimella sp. VS-2014 strain RS9010 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 4791 259 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Oigolaimella Oigolaimella sp. VS-2014
8324170 8324170 PRJNA690592_S_NODE_153547_length_274_cov_1.522388_g152533_i0 PRJNA690592 153547 274 1.522388 4.17134312 Trichinella spiralis 6334 Nematoda Nematoda 58.4 5.41e-4   NTclustered gi|339236516|ref|XM_003379765.1| 6334 g152533 i0 97.059 0.124087591240876 34 1 12 0 24 57 1139 1172 Trichinella spiralis legumain (Tsp_03464) mRNA, complete cds blastn 34 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
9599454 9599454 PRJNA690592_S_NODE_136568_length_288_cov_1.790698_g135554_i0 PRJNA690592 136568 288 1.790698 5.15721024 Caenorhabditis remanei 31234 Nematoda Nematoda 219 2.4799999999999998e-52   NTclustered gi|2445372184|ref|XM_053729847.1| 31234 g135554 i0 80.969 73.6076388888889 289 44 98 9 7 288 1074 790 Caenorhabditis remanei uncharacterized protein (GCK72_013429), partial mRNA blastn 21199 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
9599502 9599502 PRJNA690592_S_NODE_144448_length_281_cov_2.437500_g143434_i0 PRJNA690592 144448 281 2.4375 6.849375 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.026   NTclustered gi|687022667|emb|LM525581.1| 174720 g143434 i0 100 0.099644128113879 28 0 10 0 65 92 206960 206933 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_scaffold0000020 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
10875245 10875245 PRJNA690592_S_NODE_171649_length_260_cov_2.224599_g170635_i0 PRJNA690592 171649 260 2.224599 5.7839574 Caenorhabditis remanei 31234 Nematoda Nematoda 115 2.98e-21   NTclustered gi|2445371294|ref|XM_053729542.1| 31234 g170635 i0 81.119 4.54230769230769 143 27 55 0 85 227 100 242 Caenorhabditis remanei uncharacterized protein (GCK72_012970), partial mRNA blastn 1181 115 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10875359 10875359 PRJNA690592_S_NODE_185849_length_251_cov_1.297753_g184835_i0 PRJNA690592 185849 251 1.297753 3.25736003 Caenorhabditis briggsae 6238 Nematoda Nematoda 180 1e-40   NTclustered gi|268537105|ref|XM_002633643.1| 6238 g184835 i0 80.672 16.7529880478088 238 40 94 5 17 251 2633 2399 Caenorhabditis briggsae Protein CBR-MCA-3 (Cbr-mca-3), partial mRNA blastn 4205 180 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
10875597 10875597 PRJNA690592_S_NODE_214429_length_241_cov_1.375000_g213415_i0 PRJNA690592 214429 241 1.375 3.31375 Trichinella spiralis 6334 Nematoda Nematoda 52.8 0.022   NTclustered gi|339252977|ref|XM_003371664.1| 6334 g213415 i0 100 0.116182572614108 28 0 12 0 165 192 1049 1022 Trichinella spiralis ubiquitin-conjugating enzyme E2 1 (Tsp_05377) mRNA, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
10875797 10875797 PRJNA690592_S_NODE_42129_length_473_cov_8.690000_g41115_i0 PRJNA690592 42129 473 8.69 41.1037 Levipalatum texanum 1486449 Nematoda Nematoda 222 3.31e-53   NTclustered gi|610559467|gb|KJ395558.1| 1486449 g41115 i0 78.09 52.3890063424947 356 74 75 4 71 424 31 384 Levipalatum texanum ribosomal protein (rpl-23) gene, partial cds blastn 24780 222 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Levipalatum Levipalatum texanum
14700085 14700085 PRJNA690592_S_NODE_165932_length_264_cov_4.664921_g164918_i0 PRJNA690592 165932 264 4.664921 12.31539144 Caenorhabditis brenneri 135651 Nematoda Nematoda 156 1.7900000000000002e-33   NTclustered gi|190336380|gb|EU726795.1| 135651 g164918 i0 88.372 16.0492424242424 129 15 49 0 136 264 720 592 Caenorhabditis brenneri clone 13B7.08 14-3-3 protein (ftt-2) mRNA, complete cds blastn 4237 156 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis brenneri
19030745 19030745 PRJNA690592_S_NODE_30575_length_548_cov_1.374737_g29571_i0 PRJNA690592 30575 548 1.374737 7.53355876 Metazoa 33208 Nematoda Nematoda 54.7 0.015   NTclustered gi|312067253|ref|XM_003136608.1| 7209 g29571 i0 100 0.105839416058394 29 0 5 0 163 191 133 161 Loa loa hypothetical protein partial mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Loa Loa loa
19798497 19798497 PRJNA690592_S_NODE_220676_length_220_cov_16.394558_g219662_i0 PRJNA690592 220676 220 16.394558 36.0680276 Cooperia oncophora 27828 Nematoda Nematoda 196 8.5e-46   NTclustered gi|38491404|gb|AY372758.1| 27828 g219662 i0 83.654 82.5454545454545 208 34 95 0 1 208 238 31 Cooperia oncophora actin mRNA, complete cds blastn 18160 196 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Trichostrongylidae Cooperia Cooperia oncophora
21073533 21073533 PRJNA690592_S_NODE_162977_length_267_cov_1.190722_g161963_i0 PRJNA690592 162977 267 1.190722 3.17922774 Caenorhabditis remanei 31234 Nematoda Nematoda 122 1.8399999999999998e-23   NTclustered gi|2445372509|ref|XM_003103485.2| 31234 g161963 i0 80.769 1.98501872659176 156 30 58 0 64 219 891 736 Caenorhabditis remanei uncharacterized protein (GCK72_013603), partial mRNA blastn 530 122 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
21073736 21073736 PRJNA690592_S_NODE_185977_length_251_cov_1.247191_g184963_i0 PRJNA690592 185977 251 1.247191 3.13044941 Caenorhabditis elegans 6239 Nematoda Nematoda 148 2.8199999999999996e-31   NTclustered gi|1972310648|ref|NM_001381113.3| 6239 g184963 i0 85.034 8.66135458167331 147 20 58 2 1 146 862 1007 Caenorhabditis elegans putative S-adenosylmethionine synthase 1 (sams-1), mRNA blastn 2174 148 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
22348082 22348082 PRJNA690592_S_NODE_108538_length_317_cov_1.262295_g107524_i0 PRJNA690592 108538 317 1.262295 4.00147515 Koerneria sp. RS1982 358044 Nematoda Nematoda 248 3.53e-61   NTclustered gi|150982035|gb|EF634606.1| 358044 g107524 i0 80.878 20.9400630914826 319 57 100 2 1 317 365 49 Koerneria sp. RS1982 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 6638 248 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982
22349126 22349126 PRJNA690592_S_NODE_48458_length_445_cov_2.548387_g47444_i0 PRJNA690592 48458 445 2.548387 11.34032215 Caenorhabditis briggsae 6238 Nematoda Nematoda 363 1.75e-95   NTclustered gi|268559799|ref|XM_002646027.1| 6238 g47444 i0 88.235 71.6539325842697 306 32 68 4 142 445 1307 1004 Caenorhabditis briggsae Protein CBG07939 (CBG07939), partial mRNA blastn 31886 363 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis briggsae
22349331 22349331 PRJNA690592_S_NODE_76958_length_365_cov_1.503425_g75944_i0 PRJNA690592 76958 365 1.503425 5.48750125 Tylopharynx sp. WEM-2009 669147 Nematoda Nematoda 219 3.2299999999999998e-52   NTclustered gi|256709336|gb|GQ422343.1| 669147 g75944 i0 77.654 9.09041095890411 358 80 98 0 1 358 394 37 Tylopharynx sp. WEM-2009 large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 3318 219 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Tylopharyngidae Tylopharynx Tylopharynx sp. WEM-2009
23624305 23624305 PRJNA690592_S_NODE_216719_length_239_cov_3.626506_g215705_i0 PRJNA690592 216719 239 3.626506 8.66734934 Allodiplogaster sudhausi 2761625 Nematoda Nematoda 89.8 1.64e-13   NTclustered gi|675118796|gb|KJ877267.1| 2761625 g215705 i0 89.041 18.347280334728 73 7 31 1 160 232 1581 1510 Koerneria sudhausi strain SB413 28S ribosomal RNA gene, partial sequence blastn 4385 89.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Allodiplogaster Allodiplogaster sudhausi
23624547 23624547 PRJNA690592_S_NODE_49499_length_441_cov_1.918478_g48485_i0 PRJNA690592 49499 441 1.918478 8.46048798 Caenorhabditis remanei 31234 Nematoda Nematoda 52.8 0.043   NTclustered gi|2445376447|ref|XM_053731074.1| 31234 g48485 i0 100 0.0634920634920635 28 0 6 0 54 81 564 537 Caenorhabditis remanei uncharacterized protein (GCK72_015702), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
24897000 24897000 PRJNA690592_S_NODE_114080_length_311_cov_0.894958_g113066_i0 PRJNA690592 114080 311 0.894958 2.78331938 Diplogastrellus gracilis 669117 Nematoda Nematoda 243 1.61e-59   NTclustered gi|256709130|gb|GQ422217.1| 669117 g113066 i0 83.333 19.0836012861736 264 42 85 2 33 295 727 465 Diplogastrellus gracilis large subunit ribosomal protein 2 (rpl-2) mRNA, partial cds blastn 5935 243 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Diplogasteridae Diplogastrellus Diplogastrellus gracilis
24897980 24897980 PRJNA690592_S_NODE_39120_length_489_cov_2.649038_g38108_i0 PRJNA690592 39120 489 2.649038 12.95379582 Caenorhabditis elegans 6239 Nematoda Nematoda 342 2.53e-89   NTclustered gi|1831506465|ref|NM_001380979.1| 6239 g38108 i0 79.63 18.3026584867076 486 91 99 7 5 486 1888 2369 Caenorhabditis elegans Elongation factor 2 (eef-2), partial mRNA blastn 8950 342 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25405541 25405541 PRJNA690592_S_NODE_47380_length_450_cov_1.384615_g46366_i0 PRJNA690592 47380 450 1.384615 6.2307675 Opisthokonta 33154 Nematoda Nematoda 54.7 0.012   NTclustered gi|1831517864|ref|NM_001136422.4| 6239 g46366 i0 100 0.46 29 0 6 0 368 396 36 8 Caenorhabditis elegans FIP (Fungus-Induced Protein) Related (fipr-2), partial mRNA blastn 207 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;