RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690592 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8831904 8831904 PRJNA690592_S_NODE_152687_length_275_cov_1.143564_g151673_i0 PRJNA690592 152687 275 1.143564 3.144801 root 1 Root_unresolved Root_unresolved 60.2 1.51e-4   NTclustered gi|2040369058|gb|CP065588.1| 40477 g151673 i0 97.222 4.71272727272727 36 0 13 1 7 41 314726 314761 Mycoplasma mycoides subsp. capri strain M-5 chromosome, complete genome blastn 1296 60.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma mycoides
14700395 14700395 PRJNA690592_S_NODE_207732_length_243_cov_4.623529_g206718_i0 PRJNA690592 207732 243 4.6235290000000004 11.23517547 Candidatus Xianfuyuplasma coldseepsis 2782163 Bacteria Bacteria 58.4 4.71e-4   NTclustered gi|1883609011|gb|CP048914.1| 2782163 g206718 i0 90.909 0.181069958847737 44 3 18 1 120 163 1397638 1397596 Candidatus Xianfuyuplasma coldseepsis strain zrk13 chromosome, complete genome blastn 44 58.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Candidatus Izemoplasmatales Candidatus Izemoplasmataceae Candidatus Xianfuyuplasma Candidatus Xianfuyuplasma coldseepsis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;