RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Hemichordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690592 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9600015 9600015 PRJNA690592_S_NODE_216548_length_240_cov_2.491018_g215534_i0 PRJNA690592 216548 240 2.491018 5.9784432 Ptychodera flava 63121 Hemichordata other_Eukaryota 124 4.51e-24   NTclustered gi|2875653540|ref|XM_070711777.1| 63121 g215534 i0 86.607 17.7541666666667 112 15 47 0 129 240 2227 2116 PREDICTED: Ptychodera flava tubulin alpha-1A chain-like (LOC139141995), mRNA blastn 4261 124 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
13424812 13424812 PRJNA690592_S_NODE_1451_length_1811_cov_249.355581_g1212_i0 PRJNA690592 1451 1811 249.355581 4515.82957191 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 58.4 0.004   NTclustered gi|585647575|ref|XM_006814007.1| 10224 g1212 i0 94.595 0.0204307012700166 37 2 2 0 1426 1462 389 353 PREDICTED: Saccoglossus kowalevskii probable ATP-dependent RNA helicase DDX23-like (LOC100372513), mRNA blastn 37 58.4 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
13425837 13425837 PRJNA690592_S_NODE_8231_length_985_cov_225.151316_g1212_i2 PRJNA690592 8231 985 225.151316 2217.7404626 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 58.4 0.002   NTclustered gi|585647575|ref|XM_006814007.1| 10224 g1212 i2 94.595 0.0375634517766497 37 2 4 0 600 636 389 353 PREDICTED: Saccoglossus kowalevskii probable ATP-dependent RNA helicase DDX23-like (LOC100372513), mRNA blastn 37 58.4 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
18523993 18523993 PRJNA690592_S_NODE_75835_length_367_cov_2.357143_g74821_i0 PRJNA690592 75835 367 2.357143 8.65071481 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 52.8 0.035   NTclustered gi|585709368|ref|XM_006824272.1| 10224 g74821 i0 100 0.0762942779291553 28 0 8 0 253 280 1138 1111 PREDICTED: Saccoglossus kowalevskii myotubularin-related protein 4-like (LOC100371745), partial mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii
24897823 24897823 PRJNA690592_S_NODE_219460_length_229_cov_2.865385_g218446_i0 PRJNA690592 219460 229 2.865385 6.56173165 Ptychodera flava 63121 Hemichordata other_Eukaryota 78.7 3.37e-10   NTclustered gi|2875724809|ref|XM_070691020.1| 63121 g218446 i0 100 13.646288209607 42 0 18 0 10 51 173 132 PREDICTED: Ptychodera flava histone H2B, gonadal-like (LOC139124911), mRNA blastn 3125 78.7 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;