RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690592 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5775505 5775505 PRJNA690592_S_NODE_73165_length_373_cov_1.540000_g72151_i0 PRJNA690592 73165 373 1.54 5.7442 Phototrophicus methaneseepsis 2710758 Bacteria Bacteria 379 1.43e-100   NTclustered gi|1932369605|gb|CP062983.1| 2710758 g72151 i0 85.6 372.595174262735 375 38 99 11 4 373 2828230 2827867 Phototrophicus methaneseepsis strain ZRK33 chromosome, complete genome blastn 138978 379 1 Bacteria   Bacillati Chloroflexota Candidatus Thermofontia Phototrophicales Phototrophicaceae Phototrophicus Phototrophicus methaneseepsis
13425274 13425274 PRJNA690592_S_NODE_205791_length_244_cov_1.350877_g204777_i0 PRJNA690592 205791 244 1.350877 3.29613988 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 100 7.75e-17   NTclustered gi|2893358456|emb|OZ220748.1| 2026734 g204777 i0 84.112 3.46311475409836 107 13 43 2 1 105 1537752 1537648 MAG: Dehalococcoidia bacterium isolate 6c7b36c8-b3ab-4b4c-a352-7e98d29eb5d7 genome assembly, chromosome: 1 blastn 845 100 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
24897698 24897698 PRJNA690592_S_NODE_204720_length_244_cov_5.385965_g203706_i0 PRJNA690592 204720 244 5.385965 13.1417546 Caldilineaceae bacterium 2614250 Bacteria Bacteria 189 1.6099999999999996e-43   NTclustered gi|2893358448|emb|OZ220740.1| 2614250 g203706 i0 82.589 3.39754098360656 224 30 99 3 21 244 4593838 4594052 MAG: Caldilineaceae bacterium isolate a9c3af8e-fa1b-4b3f-b938-3e58e5a69213 genome assembly, chromosome: 1 blastn 829 189 1 Bacteria   Bacillati Chloroflexota Caldilineae Caldilineales Caldilineaceae   Caldilineaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;