RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA690592 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3730882 3730882 PRJNA690592_S_NODE_43663_length_466_cov_1.900763_g42649_i0 PRJNA690592 43663 466 1.900763 8.85755558 Fusobacterium 848 Bacteria Bacteria 58.4 0.001   NTclustered gi|2446175567|gb|CP117964.1| 851 g42649 i0 94.595 6.74892703862661 37 2 8 0 76 112 1498720 1498756 Fusobacterium nucleatum strain 2/1/50A chromosome, complete genome blastn 3145 58.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
5007426 5007426 PRJNA690592_S_NODE_6544_length_1081_cov_1.588294_g5957_i0 PRJNA690592 6544 1081 1.588294 17.16945814 Cetobacterium 180162 Bacteria Bacteria 1947 0   NTclustered gi|2865368125|gb|CP122294.1| 188913 g5957 i0 99.167 523.894542090657 1081 9 100 0 1 1081 279753 278673 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 566330 1947 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
15207531 15207531 PRJNA690592_S_NODE_128172_length_296_cov_1.524664_g127158_i0 PRJNA690592 128172 296 1.524664 4.51300544 Cetobacterium 180162 Bacteria Bacteria 536 6.2199999999999986e-148   NTclustered gi|2666488225|gb|CP143319.1| 188913 g127158 i0 99.324 5 296 2 100 0 1 296 1368463 1368758 Cetobacterium somerae strain ceto chromosome, complete genome blastn 1480 536 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae
24897579 24897579 PRJNA690592_S_NODE_192660_length_249_cov_0.875000_g191646_i0 PRJNA690592 192660 249 0.875 2.17875 Cetobacterium somerae 188913 Bacteria Bacteria 359 1.19e-94   NTclustered gi|2201062197|gb|CP092519.1| 188913 g191646 i0 92.742 98.8795180722892 248 18 99 0 1 248 1561215 1561462 Cetobacterium somerae strain CS2105-BJ chromosome, complete genome blastn 24621 359 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;