RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA690592 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14700561 14700561 PRJNA690592_S_NODE_29292_length_558_cov_2.072165_g28292_i0 PRJNA690592 29292 558 2.072165 11.5626807 Persicimonas caeni 2292766 Bacteria Bacteria 69.4 5.46e-7   NTclustered gi|1695542189|gb|CP041186.1| 2292766 g28292 i0 89.091 0.263440860215054 55 6 10 0 1 55 7226688 7226742 Persicimonas caeni strain YN101 chromosome blastn 147 69.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
17249586 17249586 PRJNA690592_S_NODE_38234_length_494_cov_7.308789_g37223_i0 PRJNA690592 38234 494 7.308789 36.10541766 uncultured delta proteobacterium 34034 Bacteria Bacteria 647 0   NTclustered gi|374854163|dbj|AP011765.1| 34034 g37223 i0 90.342 201.779352226721 497 42 100 6 1 494 14674 14181 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 99679 647 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
19030646 19030646 PRJNA690592_S_NODE_153555_length_274_cov_1.517413_g152541_i0 PRJNA690592 153555 274 1.517413 4.15771162 Myxococcota 2818505 Bacteria Bacteria 388 1.69e-103   NTclustered gi|386873771|gb|JQ624277.1| 34034 g152541 i0 92.364 100.386861313869 275 17 99 4 1 273 402 674 Uncultured delta proteobacterium clone OTU-2-AFB 16S ribosomal RNA gene, partial sequence blastn 27506 388 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;