RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA690592" and tax_clade = "Methanomada group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA690592 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
672132 672132 PRJNA690592_S_NODE_93201_length_337_cov_1.242424_g92187_i0 PRJNA690592 93201 337 1.242424 4.18696888 Methanobacterium sp. BRmetb2 2025350 Archaea Archaea 54.7 0.009   NTclustered gi|1473087786|gb|CP022705.1| 2025350 g92187 i0 100 0.086053412462908 29 0 9 0 224 252 194685 194657 MAG: Methanobacterium sp. BRmetb2 chromosome, complete genome blastn 29 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp. BRmetb2
8325228 8325228 PRJNA690592_S_NODE_93387_length_337_cov_0.871212_g92373_i0 PRJNA690592 93387 337 0.871212 2.93598444 Methanothermobacter sp. EMTCatA1 2017966 Archaea Archaea 56.5 0.002   NTclustered gi|1214917725|dbj|AP018336.1| 2017966 g92373 i0 97.059 0.100890207715134 34 0 10 1 22 55 437476 437508 Methanothermobacter sp. EMTCatA1 DNA, complete genome blastn 34 56.5 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter sp. EMTCatA1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;