RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA690234" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA690234 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2454147 2454147 PRJNA690234_P_NODE_8822_length_431_cov_2.824022_g8456_i0 PRJNA690234 8822 431 2.824022 12.17153482 Plasmodium 5820 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.012   NTclustered gi|817746583|ref|XM_012482823.1| 5857 g8456 i0 100 0.134570765661253 29 0 7 0 402 430 1241 1213 Plasmodium fragile uncharacterized protein (AK88_05221), partial mRNA blastn 58 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium fragile
19797318 19797318 PRJNA690234_P_NODE_32716_length_228_cov_2.012903_g32349_i0 PRJNA690234 32716 228 2.012903 4.5894188400000004 Cryptosporidium felis 83540 SAR_Eukaryotes SAR_Eukaryotes 80.5 9.32e-11   NTclustered gi|833025125|gb|KP642067.1| 83540 g32349 i0 94.231 2.02631578947368 52 3 23 0 158 209 1846 1795 Cryptosporidium felis isolate SC142 heat shock protein 70 (HSP70) gene, partial cds blastn 462 80.5 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Cryptosporidiidae Cryptosporidium Cryptosporidium felis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;