RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA690234" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 6 ✖

bioproject 1

  • PRJNA690234 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1946068 1946068 PRJNA690234_P_NODE_15942_length_318_cov_1.812245_g15575_i0 PRJNA690234 15942 318 1.812245 5.7629391 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 292 1.61e-74   NTclustered gi|2026667530|dbj|LC618030.1| 67003 g15575 i0 83.533 75.4245283018868 334 33 100 19 1 318 5878 6205 Trypanosoma theileri YMG-11 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, ITS5, partial and complete sequence blastn 23985 292 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
5773812 5773812 PRJNA690234_P_NODE_26345_length_251_cov_0.876404_g25978_i0 PRJNA690234 26345 251 0.876404 2.19977404 uncultured kinetoplastid 204529 Euglenozoa other_Eukaryota 424 4.18e-114   NTclustered gi|363903324|gb|JN542574.1| 204529 g25978 i0 97.211 98.9521912350598 251 6 100 1 1 251 1148 1397 Uncultured kinetoplastid clone Kryos_IF_C10 18S ribosomal RNA gene, partial sequence blastn 24837 424 1 Eukaryota Discoba   Euglenozoa Kinetoplastea       uncultured kinetoplastid
19797417 19797417 PRJNA690234_P_NODE_7776_length_461_cov_1.695876_g7410_i0 PRJNA690234 7776 461 1.695876 7.81798836 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 193 2.53e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g7410 i0 93.75 26.590021691974 128 8 28 0 239 366 3852 3979 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12258 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
21581002 21581002 PRJNA690234_P_NODE_13017_length_351_cov_2.683453_g12650_i0 PRJNA690234 13017 351 2.683453 9.41892003 Vahlkampfia 5770 Heterolobosea other_Eukaryota 649 0   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g12650 i0 100 85.7407407407407 351 0 100 0 1 351 362 712 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 30095 649 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
22347515 22347515 PRJNA690234_P_NODE_22818_length_266_cov_1.202073_g22451_i0 PRJNA690234 22818 266 1.202073 3.19751418 Allovahlkampfia sp. PKD 2011a 1217110 Heterolobosea other_Eukaryota 486 5.629999999999999e-133   NTclustered gi|399764157|gb|JQ271668.1| 1217110 g22451 i0 99.624 46.0037593984962 266 1 100 0 1 266 277 12 Allovahlkampfia sp. PKD 2011a strain 4165 18S ribosomal RNA gene, partial sequence blastn 12237 486 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp. PKD 2011a
23622771 23622771 PRJNA690234_P_NODE_13179_length_349_cov_1.978261_g12812_i0 PRJNA690234 13179 349 1.978261 6.90413089 Vahlkampfia avara 74082 Heterolobosea other_Eukaryota 645 1.1899999999999993e-180   NTclustered gi|2283788571|gb|OP179657.1| 74082 g12812 i0 100 92.6676217765043 349 0 100 0 1 349 918 1266 Vahlkampfia avara isolate VA7 small subunit ribosomal RNA gene, partial sequence blastn 32341 645 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;