RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA690234" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA690234 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1178868 1178868 PRJNA690234_P_NODE_4021_length_657_cov_1.957192_g3667_i0 PRJNA690234 4021 657 1.957192 12.85875144 Vannella 95228 Discosea other_Eukaryota 1149 0   NTclustered gi|861554667|gb|KP719197.1| 197532 g3667 i0 98.021 81.0821917808219 657 13 100 0 1 657 1343 687 Vannella simplex strain A17WVB small subunit ribosomal RNA gene, partial sequence blastn 53271 1149 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella simplex
7048610 7048610 PRJNA690234_P_NODE_16206_length_316_cov_1.069959_g15839_i0 PRJNA690234 16206 316 1.069959 3.38107044 Ripella sp. GP2 1217115 Discosea other_Eukaryota 486 6.849999999999999e-133   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g15839 i0 94.654 99.8196202531646 318 10 99 5 1 313 12 327 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 31543 486 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
10874213 10874213 PRJNA690234_P_NODE_23969_length_259_cov_1.241935_g23602_i0 PRJNA690234 23969 259 1.241935 3.21661165 Cochliopodium minus 313997 Discosea other_Eukaryota 473 4.25e-129   NTclustered gi|330902862|gb|JF298257.1| 313997 g23602 i0 99.614 77.2123552123552 259 1 100 0 1 259 951 1209 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 19998 473 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
13932830 13932830 PRJNA690234_P_NODE_27851_length_248_cov_1.617143_g27484_i0 PRJNA690234 27851 248 1.617143 4.01051464 Vermamoeba 1260114 Tubulinea other_Eukaryota 448 2.4499999999999996e-121   NTclustered gi|909719645|gb|KT185625.1| 5778 g27484 i0 99.194 55.3951612903226 248 2 100 0 1 248 5211 5458 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 13738 448 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
14698879 14698879 PRJNA690234_P_NODE_13132_length_350_cov_1.158845_g12765_i0 PRJNA690234 13132 350 1.158845 4.0559575 Vannella septentrionalis 197531 Discosea other_Eukaryota 396 1.33e-105   NTclustered gi|300078499|gb|GU001161.1| 197531 g12765 i0 87.5 13.9942857142857 352 33 100 8 1 350 2522 2864 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 4898 396 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
14698977 14698977 PRJNA690234_P_NODE_17952_length_299_cov_2.070796_g17585_i0 PRJNA690234 17952 299 2.070796 6.19168004 Protacanthamoeba bohemica 325062 Discosea other_Eukaryota 424 5.11e-114   NTclustered gi|2806326584|gb|PQ345834.1| 325062 g17585 i0 92.929 58.2173913043478 297 11 99 9 3 299 195 481 Protacanthamoeba bohemica isolate 6FSb1 small subunit ribosomal RNA gene, partial sequence blastn 17407 424 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Protacanthamoeba Protacanthamoeba bohemica
17248077 17248077 PRJNA690234_P_NODE_23574_length_261_cov_1.457447_g23207_i0 PRJNA690234 23574 261 1.457447 3.80393667 Squamamoeba japonica 1167875 Evosea other_Eukaryota 366 7.48e-97   NTclustered gi|381423465|gb|JN638030.1| 1167875 g23207 i0 92.607 3.94252873563218 257 15 98 4 2 257 945 692 Squamamoeba japonica strain CCAP 1593/1 clone 2218 18S ribosomal RNA gene, partial sequence blastn 1029 366 1 Eukaryota Amoebozoa   Evosea       Squamamoeba Squamamoeba japonica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;