RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA690124" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690124 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
669717 669717 PRJNA690124_P_NODE_53281_length_244_cov_0.912281_g52915_i0 PRJNA690124 53281 244 0.912281 2.22596564 Verrucomicrobia bacterium IMCC26134 1637999 Bacteria Bacteria 134 7.640000000000001e-27   NTclustered gi|807238858|gb|CP011265.1| 1637999 g52915 i0 83.333 0.979508196721312 150 20 60 5 99 244 908301 908153 Verrucomicrobia bacterium IMCC26134, complete genome blastn 239 134 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium IMCC26134
19796173 19796173 PRJNA690124_P_NODE_33196_length_288_cov_1.232558_g32830_i0 PRJNA690124 33196 288 1.232558 3.54976704 Prosthecobacter vanneervenii 48466 Bacteria Bacteria 516 7.86e-142   NTclustered gi|12583975|gb|AF245379.1|AF245379 48466 g32830 i0 98.958 169.302083333333 288 3 100 0 1 288 819 532 Prosthecobacter sp. FC-2 23S ribosomal RNA gene, partial sequence blastn 48759 516 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter vanneervenii
24895816 24895816 PRJNA690124_P_NODE_48620_length_248_cov_0.891429_g48254_i0 PRJNA690124 48620 248 0.891429 2.21074392 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 176 1.28e-39   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g48254 i0 81.991 3.35887096774194 211 34 84 4 1 209 3118673 3118465 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 833 176 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;