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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA690124" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690124 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
669054 669054 PRJNA690124_P_NODE_23361_length_338_cov_1.935849_g22995_i0 PRJNA690124 23361 338 1.935849 6.54316962 Ancylostoma caninum 29170 Nematoda Nematoda 326 1.6999999999999999e-84   NTclustered gi|199584093|tpg|BK006069.1| 29170 g22995 i0 84.179 98.3254437869822 335 53 99 0 3 337 399 733 TPA_inf: Ancylostoma caninum eukaryotic translation elongation factor 1A (eft-2) mRNA, partial cds blastn 33234 326 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Ancylostomatidae Ancylostoma Ancylostoma caninum
5772769 5772769 PRJNA690124_P_NODE_29505_length_304_cov_2.116883_g29139_i0 PRJNA690124 29505 304 2.116883 6.43532432 Oscheius sp. JU1917 2879411 Nematoda Nematoda 562 1.06e-155   NTclustered gi|2804588271|emb|OZ182419.1| 2879411 g29139 i0 100 19.8618421052632 304 0 100 0 1 304 1329 1632 Oscheius sp. JU1917 genome assembly, organelle: mitochondrion blastn 6038 562 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Oscheius Oscheius sp. JU1917
7047962 7047962 PRJNA690124_P_NODE_37846_length_270_cov_1.583756_g37480_i0 PRJNA690124 37846 270 1.583756 4.2761412 Caenorhabditis elegans 6239 Nematoda Nematoda 231 2.96e-56   NTclustered gi|1831509458|ref|NM_064556.7| 6239 g37480 i0 85.022 9.01111111111111 227 34 84 0 1 227 4 230 Caenorhabditis elegans Large ribosomal subunit protein eL43 (rpl-37A), partial mRNA blastn 2433 231 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
8322203 8322203 PRJNA690124_P_NODE_24547_length_331_cov_1.209302_g24181_i0 PRJNA690124 24547 331 1.209302 4.00278962 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 612 1.14e-170   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g24181 i0 100 7.5226586102719 331 0 100 0 1 331 12267 12597 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 2490 612 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
8322734 8322734 PRJNA690124_P_NODE_49667_length_247_cov_1.344828_g49301_i0 PRJNA690124 49667 247 1.344828 3.32172516 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 455 1.4600000000000002e-123   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g49301 i0 100 0.995951417004049 246 0 99 0 1 246 851 1096 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 246 455 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
8322746 8322746 PRJNA690124_P_NODE_50047_length_247_cov_0.896552_g49681_i0 PRJNA690124 50047 247 0.896552 2.21448344 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 451 1.88e-122   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g49681 i0 99.595 1 247 1 100 0 1 247 4278 4524 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 247 451 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
9598255 9598255 PRJNA690124_P_NODE_55188_length_243_cov_0.882353_g54822_i0 PRJNA690124 55188 243 0.882353 2.14411779 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.022   NTclustered gi|1831506197|ref|NM_001026702.3| 6239 g54822 i0 96.875 1.44855967078189 32 0 13 1 18 48 1632 1601 Caenorhabditis elegans Phorbol ester/diacylglycerol-binding protein unc-13 (unc-13), partial mRNA blastn 352 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
10873101 10873101 PRJNA690124_P_NODE_24209_length_333_cov_1.476923_g23843_i0 PRJNA690124 24209 333 1.476923 4.91815359 Panagrellus redivivus 6233 Nematoda Nematoda 616 8.87e-172   NTclustered gi|158821922|gb|EU195986.1| 6233 g23843 i0 100 2.3033033033033 333 0 100 0 1 333 3154 3486 Panagrellus redivivus strain PS1163 28S ribosomal RNA gene, partial sequence blastn 767 616 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrellus Panagrellus redivivus
13422953 13422953 PRJNA690124_P_NODE_25011_length_328_cov_1.537255_g24645_i0 PRJNA690124 25011 328 1.537255 5.0421964 Pristionchus sp. 11 RS5228 452806 Nematoda Nematoda 215 3.72e-51   NTclustered gi|150983329|gb|EF634753.1| 452806 g24645 i0 81.181 4.30487804878049 271 47 82 4 7 275 281 13 Pristionchus sp. 11 RS5228 large subunit ribosomal protein 32 (rpl-32) mRNA, partial cds blastn 1412 215 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus sp. 11 RS5228
13423461 13423461 PRJNA690124_P_NODE_48371_length_248_cov_1.782857_g48005_i0 PRJNA690124 48371 248 1.782857 4.42148536 Trichinella spiralis 6334 Nematoda Nematoda 124 4.6899999999999996e-24   NTclustered gi|1938390596|gb|MW302146.1| 6334 g48005 i0 89.691 37.1370967741936 97 10 39 0 146 242 6239 6335 Trichinella spiralis isolate Europe-Poland-22D20-B small subunit ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 9210 124 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
14698635 14698635 PRJNA690124_P_NODE_53072_length_244_cov_1.649123_g52706_i0 PRJNA690124 53072 244 1.649123 4.02386012 Steinernema carpocapsae 34508 Nematoda Nematoda 263 9.34e-66   NTclustered gi|296940219|gb|HM067752.1| 34508 g52706 i0 86.122 99.4672131147541 245 32 100 2 1 244 1009 1252 Steinernema carpocapsae enolase mRNA, complete cds blastn 24270 263 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Steinernematidae Steinernema Steinernema carpocapsae
15971905 15971905 PRJNA690124_P_NODE_30573_length_299_cov_2.092920_g30207_i0 PRJNA690124 30573 299 2.09292 6.2578308 Pristionchus pacificus 54126 Nematoda Nematoda 324 5.34e-84   NTclustered gi|199600269|tpg|BK006064.1| 54126 g30207 i0 86.242 96.7759197324415 298 41 99 0 2 299 1322 1025 TPA_inf: Pristionchus pacificus eukaryotic translation elongation factor 1A (eft-1) mRNA, complete cds blastn 28936 324 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pacificus
17247695 17247695 PRJNA690124_P_NODE_56974_length_230_cov_3.140127_g56608_i0 PRJNA690124 56974 230 3.140127 7.2222921 Aphelenchoides besseyi 269767 Nematoda Nematoda 99 2.6e-16   NTclustered gi|748447428|gb|KP190141.1| 269767 g56608 i0 83.333 3.67826086956522 108 17 47 1 1 108 178 72 Aphelenchoides besseyi isolate Nanjing 14-3-3 protein mRNA, complete cds blastn 846 99 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides besseyi
19795823 19795823 PRJNA690124_P_NODE_16336_length_400_cov_2.293578_g15970_i0 PRJNA690124 16336 400 2.293578 9.174312 Strongyloides papillosus 174720 Nematoda Nematoda 202 3.6e-47   NTclustered gi|690018840|emb|LM526136.1| 174720 g15970 i0 79.649 6.66 285 54 71 4 63 345 7759 8041 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000493 blastn 2664 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
20304631 20304631 PRJNA690124_P_NODE_15396_length_411_cov_2.254438_g15030_i0 PRJNA690124 15396 411 2.254438 9.26574018 Panagrellus 6232 Nematoda Nematoda 760 0   NTclustered gi|1824634693|gb|MT246664.1| 6233 g15030 i0 100 78.0267639902676 411 0 100 0 1 411 60 470 Panagrellus redivivus isolate 191205_Prediv_ON_purPCR small subunit ribosomal RNA gene, partial sequence blastn 32069 760 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Panagrolaimidae Panagrellus Panagrellus redivivus
21071371 21071371 PRJNA690124_P_NODE_18677_length_375_cov_1.781457_g18311_i0 PRJNA690124 18677 375 1.781457 6.68046375 Capillaria sp. ALS-2019 2651741 Nematoda Nematoda 263 1.51e-65   NTclustered gi|1811126246|gb|MN526255.1| 2651741 g18311 i0 99.31 39.2533333333333 145 1 56 0 3 147 1188 1044 Capillaria sp. ALS-2019 large subunit ribosomal RNA gene, partial sequence blastn 14720 263 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. ALS-2019
23621823 23621823 PRJNA690124_P_NODE_18859_length_373_cov_5.386667_g18493_i0 PRJNA690124 18859 373 5.386667 20.09226791 Pseudocapillaria tomentosa 1904821 Nematoda Nematoda 689 0   NTclustered gi|2095998828|gb|MZ708958.1| 1904821 g18493 i0 100 43.573726541555 373 0 100 0 1 373 2959 2587 Pseudocapillaria tomentosa mitochondrion, complete genome blastn 16253 689 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Pseudocapillaria Pseudocapillaria tomentosa
24895912 24895912 PRJNA690124_P_NODE_52160_length_245_cov_0.906977_g51794_i0 PRJNA690124 52160 245 0.906977 2.22209365 Caenorhabditis elegans 6239 Nematoda Nematoda 206 1.6e-48   NTclustered gi|1845976051|ref|NM_001268463.4| 6239 g51794 i0 83.636 6.24897959183673 220 35 89 1 1 219 514 295 Caenorhabditis elegans Isocitrate dehydrogenase [NADP] (idh-1), mRNA blastn 1531 206 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;