RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA690124" and tax_phylum = "Echinodermata"

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tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA690124 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10873029 10873029 PRJNA690124_P_NODE_20189_length_361_cov_2.461806_g19823_i0 PRJNA690124 20189 361 2.461806 8.88711966 Linckia laevigata 109185 Echinodermata other_Eukaryota 139 2.55e-28   NTclustered gi|1806649380|dbj|LC505033.1| 109185 g19823 i0 89.908 29.8781163434903 109 9 30 2 10 117 3300 3407 Linckia laevigata NSMT:E-12913 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, external transcribed spacer region, partial and complete sequence blastn 10786 139 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Ophidiasteridae Linckia Linckia laevigata
21071372 21071372 PRJNA690124_P_NODE_18717_length_375_cov_1.145695_g18351_i0 PRJNA690124 18717 375 1.145695 4.29635625 Lytechinus variegatus 7654 Echinodermata other_Eukaryota 204 9.31e-48   NTclustered gi|2037960180|ref|XM_041625507.1| 7654 g18351 i0 81.452 3.73866666666667 248 46 66 0 47 294 420 173 PREDICTED: Lytechinus variegatus 60S ribosomal protein L7a-like (LOC121428698), mRNA blastn 1402 204 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus variegatus
21071655 21071655 PRJNA690124_P_NODE_31057_length_297_cov_1.401786_g30691_i0 PRJNA690124 31057 297 1.401786 4.16330442 Patiria miniata 46514 Echinodermata other_Eukaryota 52.8 0.028   NTclustered gi|1944867566|ref|XM_038198622.1| 46514 g30691 i0 100 0.65993265993266 28 0 9 0 153 180 10295 10322 PREDICTED: Patiria miniata ELKS/Rab6-interacting/CAST family member 1-like (LOC119726775), transcript variant X4, mRNA blastn 196 52.8 1 Eukaryota Opisthokonta Metazoa Echinodermata Asteroidea Valvatida Asterinidae Patiria Patiria miniata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;