RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA690124" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA690124 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5773285 5773285 PRJNA690124_P_NODE_53485_length_244_cov_0.912281_g53119_i0 PRJNA690124 53485 244 0.912281 2.22596564 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 191 4.47e-44   NTclustered gi|2893358407|emb|OZ220698.1| 2026734 g53119 i0 87.574 39.2049180327869 169 16 68 5 79 244 1183172 1183338 MAG: Dehalococcoidia bacterium isolate 1c31877f-31fb-4be5-889e-2983ccd84c47 genome assembly, chromosome: 1 blastn 9566 191 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
8322613 8322613 PRJNA690124_P_NODE_43647_length_253_cov_0.866667_g43281_i0 PRJNA690124 43647 253 0.866667 2.19266751 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 265 2.71e-66   NTclustered gi|2874253981|emb|OY970306.1| 1672391 g43281 i0 86.92 2.78656126482213 237 29 93 2 15 250 3354730 3354965 MAG: uncultured Chloroflexia bacterium isolate MFD02134.bin.c.1 genome assembly, chromosome: 1 blastn 705 265 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
10873747 10873747 PRJNA690124_P_NODE_53789_length_244_cov_0.912281_g53423_i0 PRJNA690124 53789 244 0.912281 2.22596564 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 178 3.48e-40   NTclustered gi|2874253698|emb|OY969424.1| 1672391 g53423 i0 80.328 35.4877049180328 244 41 99 6 1 242 1768096 1767858 MAG: uncultured Chloroflexia bacterium isolate MFD06229.bin.c.1 genome assembly, chromosome: 1 blastn 8659 178 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
16481418 16481418 PRJNA690124_P_NODE_42973_length_253_cov_1.316667_g42607_i0 PRJNA690124 42973 253 1.316667 3.33116751 Chloroflexota 200795 Bacteria Bacteria 315 2.65e-81   NTclustered gi|470475646|ref|NR_076292.1| 167964 g42607 i0 89.6 144.0395256917 250 22 98 4 2 250 2695 2941 Anaerolinea thermophila strain UNI-1 23S ribosomal RNA gene, complete sequence blastn 36442 318 0.990566037735849 Bacteria   Bacillati Chloroflexota Anaerolineae Anaerolineales Anaerolineaceae Anaerolinea Anaerolinea thermophila
21072000 21072000 PRJNA690124_P_NODE_46937_length_250_cov_0.881356_g46571_i0 PRJNA690124 46937 250 0.881356 2.20339 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 193 1.28e-44   NTclustered gi|2893358456|emb|OZ220748.1| 2026734 g46571 i0 82.791 0.86 215 37 86 0 36 250 2872523 2872309 MAG: Dehalococcoidia bacterium isolate 6c7b36c8-b3ab-4b4c-a352-7e98d29eb5d7 genome assembly, chromosome: 1 blastn 215 193 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium
21072021 21072021 PRJNA690124_P_NODE_47877_length_249_cov_0.886364_g47511_i0 PRJNA690124 47877 249 0.886364 2.20704636 Tepidiformaceae bacterium 3022862 Bacteria Bacteria 152 2.1599999999999998e-32   NTclustered gi|2531948656|emb|OY282446.1| 3022862 g47511 i0 84.277 0.63855421686747 159 21 63 4 25 181 727472 727628 MAG: Tepidiformaceae bacterium genome assembly, chromosome: 1 blastn 159 152 1 Bacteria   Bacillati Chloroflexota Tepidiformia Tepidiformales Tepidiformaceae   Tepidiformaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;