RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA690124" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 12 ✖

bioproject 1

  • PRJNA690124 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5772722 5772722 PRJNA690124_P_NODE_27405_length_315_cov_0.966942_g27039_i0 PRJNA690124 27405 315 0.966942 3.0458673 Bodo saltans 75058 Euglenozoa other_Eukaryota 388 1.98e-103   NTclustered gi|226347424|gb|FJ807252.1| 75058 g27039 i0 88.924 138.495238095238 316 33 100 2 1 315 791 477 Bodo saltans strain CCAP 1907/2 elongation factor 1 alpha gene, partial cds blastn 43626 388 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
5773408 5773408 PRJNA690124_P_NODE_7865_length_572_cov_2.731463_g7503_i0 PRJNA690124 7865 572 2.731463 15.62396836 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 193 3.19e-44   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g7503 i0 93.75 21.236013986014 128 8 22 0 1 128 3979 3852 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 12147 193 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
7556353 7556353 PRJNA690124_P_NODE_30446_length_300_cov_1.321586_g30080_i0 PRJNA690124 30446 300 1.321586 3.964758 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 305 1.94e-78   NTclustered gi|15788963|gb|AF416379.1|AF416379 5661 g30080 i0 91.441 104.506666666667 222 19 74 0 1 222 222 1 Leishmania donovani elongation factor 1-alpha mRNA, partial cds blastn 31352 305 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania donovani
7556365 7556365 PRJNA690124_P_NODE_31386_length_295_cov_2.680180_g31020_i0 PRJNA690124 31386 295 2.68018 7.906531 Vahlkampfia 5770 Heterolobosea other_Eukaryota 545 1.03e-150   NTclustered gi|2874368078|gb|PQ819802.1| 74082 g31020 i0 100 55.5762711864407 295 0 100 0 1 295 647 353 Vahlkampfia avara strain CCAP 1588/1A small subunit ribosomal RNA gene and internal transcribed spacer 1, partial sequence blastn 16395 545 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
8831303 8831303 PRJNA690124_P_NODE_23607_length_337_cov_1.181818_g23241_i0 PRJNA690124 23607 337 1.181818 3.98272666 Trypanosoma 5690 Euglenozoa other_Eukaryota 281 3.730000000000001e-71   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g23241 i0 86.873 103.682492581602 259 25 86 9 83 337 5413 5160 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 34941 283 0.992932862190813 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
9598282 9598282 PRJNA690124_P_NODE_56308_length_242_cov_0.911243_g55942_i0 PRJNA690124 56308 242 0.911243 2.20520806 Trypanosoma grayi 71804 Euglenozoa other_Eukaryota 161 3.47e-35   NTclustered gi|686648116|ref|XM_009318228.1| 71804 g55942 i0 85.714 14.6694214876033 154 20 69 2 76 228 1 153 Trypanosoma grayi kinetoplastid membrane protein KMP-11 partial mRNA blastn 3550 161 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma grayi
12657772 12657772 PRJNA690124_P_NODE_25310_length_326_cov_2.142292_g24944_i0 PRJNA690124 25310 326 2.142292 6.98387192 Naegleria 5761 Heterolobosea other_Eukaryota 128 4.95e-25   NTclustered gi|2031946985|emb|OD958550.1| 5763 g24944 i0 85.95 39.8435582822086 121 15 63 2 1 120 3459 3340 Naegleria fowleri Karachi_NF001 strain blastn 12989 128 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
13932447 13932447 PRJNA690124_P_NODE_32571_length_290_cov_2.423963_g32205_i0 PRJNA690124 32571 290 2.423963 7.0294927 Vahlkampfia 5770 Heterolobosea other_Eukaryota 536 6.079999999999999e-148   NTclustered gi|2283788571|gb|OP179657.1| 74082 g32205 i0 100 98.4379310344828 290 0 100 0 1 290 1267 978 Vahlkampfia avara isolate VA7 small subunit ribosomal RNA gene, partial sequence blastn 28547 536 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia avara
17246847 17246847 PRJNA690124_P_NODE_18754_length_374_cov_2.820598_g18388_i0 PRJNA690124 18754 374 2.820598 10.54903652 Bodo saltans 75058 Euglenozoa other_Eukaryota 691 0   NTclustered gi|1509798611|gb|MH614643.1| 75058 g18388 i0 100 98.4786096256685 374 0 100 0 1 374 993 620 Bodo saltans small subunit ribosomal RNA gene, partial sequence blastn 36831 691 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
21580748 21580748 PRJNA690124_P_NODE_40417_length_261_cov_1.882979_g40051_i0 PRJNA690124 40417 261 1.882979 4.91457519 Bodo 5712 Euglenozoa other_Eukaryota 460 3.3399999999999995e-125   NTclustered gi|45739076|gb|AY490234.1| 75058 g40051 i0 98.467 86.9808429118774 261 4 100 0 1 261 1206 946 Bodo saltans 18S ribosomal RNA gene, partial sequence blastn 22702 460 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
24895074 24895074 PRJNA690124_P_NODE_15000_length_416_cov_2.206997_g14634_i0 PRJNA690124 15000 416 2.206997 9.18110752 Vahlkampfia sp. 1874882 Heterolobosea other_Eukaryota 547 4.1899999999999986e-151   NTclustered gi|2651357786|gb|PP174301.1| 1874882 g14634 i0 91.4 99.5168269230769 407 23 97 8 15 416 3255 2856 Vahlkampfia sp. isolate 24M small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 41399 547 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Vahlkampfia Vahlkampfia sp.
24895298 24895298 PRJNA690124_P_NODE_25940_length_323_cov_1.168000_g25574_i0 PRJNA690124 25940 323 1.168 3.77264 Allovahlkampfia sp. 1874883 Heterolobosea other_Eukaryota 542 1.48e-149   NTclustered gi|2651357779|gb|PP174295.1| 1874883 g25574 i0 96.904 23.390092879257 323 10 100 0 1 323 1894 2216 Allovahlkampfia sp. isolate P10 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 7555 542 1 Eukaryota Discoba   Heterolobosea     Acrasidae Allovahlkampfia Allovahlkampfia sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;