RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_superkingdom = "Archaea"

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tax_superkingdom 1

  • Archaea · 3 ✖

tax_phylum 1

tax_kingdom 1

bioproject 1

  • PRJNA689790 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3219589 3219589 PRJNA689790_S_NODE_2463_length_409_cov_2.118280_g2348_i0 PRJNA689790 2463 409 2.11828 8.6637652 uncultured Methanobacterium sp. 176306 Archaea Archaea 52.8 0.039   NTclustered gi|2621703503|emb|OY762552.1| 176306 g2348 i0 100 0.0684596577017115 28 0 7 0 67 94 2248673 2248700 MAG: uncultured Methanobacterium sp. isolate 3f2017ab-9e69-417f-80a5-32741c1572f8 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
21580314 21580314 PRJNA689790_S_NODE_12217_length_171_cov_1.164179_g12102_i0 PRJNA689790 12217 171 1.164179 1.99074609 Haloprofundus 1911573 Archaea Archaea 52.8 0.014   NTclustered gi|1633225932|gb|CP039833.1| 2572921 g12102 i0 100 0.327485380116959 28 0 16 0 6 33 609549 609522 Haloprofundus sp. MHR1 chromosome, complete genome blastn 56 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloprofundus Haloprofundus sp. MHR1
22346078 22346078 PRJNA689790_S_NODE_14938_length_157_cov_1.616667_g14823_i0 PRJNA689790 14938 157 1.616667 2.53816719 Halorhabdus sp. BNX81 2980181 Archaea Archaea 62.1 2.15e-5   NTclustered gi|2460785470|gb|CP107254.1| 2980181 g14823 i0 94.872 0.248407643312102 39 2 25 0 109 147 2014429 2014391 Halorhabdus sp. BNX81 chromosome, complete genome blastn 39 62.1 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halorhabdus Halorhabdus sp. BNX81

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;