RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA689790 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6282131 6282131 PRJNA689790_S_NODE_4605_length_283_cov_1.247967_g4490_i0 PRJNA689790 4605 283 1.247967 3.53174661 Lawsonia 41707 Bacteria Bacteria 490 4.67e-134   NTclustered gi|2318587541|gb|CP107054.1| 29546 g4490 i0 97.88 239.339222614841 283 6 100 0 1 283 655510 655228 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 67733 490 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis
24130032 24130032 PRJNA689790_S_NODE_14059_length_161_cov_1.556452_g13944_i0 PRJNA689790 14059 161 1.556452 2.50588772 Lawsonia 41707 Bacteria Bacteria 261 2.04e-65   NTclustered gi|2318587541|gb|CP107054.1| 29546 g13944 i0 97.386 254.341614906832 153 4 99 0 1 153 653761 653913 Lawsonia intracellularis strain PPE-GX01-2022 chromosome, complete genome blastn 40949 261 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Lawsonia Lawsonia intracellularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;