RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Prasinodermophyta"

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tax_superkingdom 1

tax_phylum 1

  • Prasinodermophyta · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA689790 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15971456 15971456 PRJNA689790_S_NODE_2633_length_392_cov_1.411268_g2518_i0 PRJNA689790 2633 392 1.411268 5.53217056 Prasinococcus sp. CCMP1194 110672 Plants Plants 187 9.849999999999999e-43   NTclustered gi|1778215561|gb|MN662312.1| 110672 g2518 i0 84.865 8.59948979591837 185 28 47 0 1 185 6783 6967 Prasinococcus sp. CCMP1194 mitochondrion, complete genome blastn 3371 187 1 Eukaryota   Viridiplantae Prasinodermophyta Palmophyllophyceae Prasinococcales Prasinococcaceae Prasinococcus Prasinococcus sp. CCMP1194

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;