RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668720 668720 PRJNA689790_S_NODE_15941_length_153_cov_2.008621_g15826_i0 PRJNA689790 15941 153 2.008621 3.07319013 Sycon ciliatum 27933 Porifera other_Eukaryota 95.3 2.05e-15   NTclustered gi|457867032|emb|HF570310.1| 27933 g15826 i0 80.952 3.09803921568627 126 18 80 5 9 131 208 330 Sycon ciliatum mRNA for 60S ribosomal protein L22 (rpl22 gene) blastn 474 95.3 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum
17246617 17246617 PRJNA689790_S_NODE_15974_length_153_cov_1.681034_g15859_i0 PRJNA689790 15974 153 1.681034 2.57198202 Oscarella lobularis 121494 Porifera other_Eukaryota 143 7.23e-30   NTclustered gi|2746767005|ref|XM_065987471.1| 121494 g15859 i0 84 23.718954248366 150 22 97 2 1 149 1032 1180 PREDICTED: Oscarella lobularis succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like (LOC136197657), mRNA blastn 3629 143 1 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis
19795648 19795648 PRJNA689790_S_NODE_15656_length_154_cov_2.076923_g15541_i0 PRJNA689790 15656 154 2.076923 3.19846142 Sycon ciliatum 27933 Porifera other_Eukaryota 121 3.4199999999999996e-23   NTclustered gi|2732905537|ref|XM_065340773.1| 27933 g15541 i0 86.364 10.012987012987 110 15 71 0 8 117 189 80 PREDICTED: Sycon ciliatum actin-2-like (LOC135828326), mRNA blastn 1542 121 1 Eukaryota Opisthokonta Metazoa Porifera Calcarea Leucosolenida Sycettidae Sycon Sycon ciliatum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;