RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5772303 5772303 PRJNA689790_S_NODE_15325_length_156_cov_0.974790_g15210_i0 PRJNA689790 15325 156 0.97479 1.5206724 Schistosoma haematobium 6185 Platyhelminthes Platyhelminthes 122 9.66e-24   NTclustered gi|2318772314|ref|XM_012936387.3| 6185 g15210 i0 81.169 10.1602564102564 154 27 98 2 3 155 628 780 Schistosoma haematobium Guanine nucleotide-binding protein G(o) subunit alpha (GNAO1), partial mRNA blastn 1585 122 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma haematobium
19029817 19029817 PRJNA689790_S_NODE_4955_length_271_cov_15.799145_g4840_i0 PRJNA689790 4955 271 15.799145 42.81568295 Opisthokonta 33154 Platyhelminthes Platyhelminthes 217 8.329999999999999e-52   NTclustered gi|393794039|dbj|AK388636.1| 6161 g4840 i0 84.071 67.3394833948339 226 35 83 1 45 270 28 252 Dugesia japonica cDNA, clone: Dj_aH_000_00546HH.full, full-insert sequence, expressed in adult head blastn 18249 217 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Rhabditophora Tricladida Dugesiidae Dugesia Dugesia japonica
23621599 23621599 PRJNA689790_S_NODE_2479_length_407_cov_3.048649_g2364_i0 PRJNA689790 2479 407 3.048649 12.40800143 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 243 2.16e-59   NTclustered gi|1116517974|gb|AY485340.2| 6183 g2364 i0 89.231 74.4496314496315 195 19 48 2 214 407 227 34 Schistosoma mansoni ubiquitin mRNA, partial cds blastn 30301 243 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;