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contig_metadata

14 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA689790 · 14 ✖

analysis 1

  • blastn · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668787 668787 PRJNA689790_S_NODE_9121_length_196_cov_1.471698_g9006_i0 PRJNA689790 9121 196 1.471698 2.88452808 Saprolegnia diclina 112098 SAR_Eukaryotes SAR_Eukaryotes 161 2.7e-35   NTclustered gi|669155569|ref|XM_008615125.1| 1156394 g9006 i0 82.051 69.8265306122449 195 29 99 3 2 196 404 592 Saprolegnia diclina VS20 glyceraldehyde-3-phosphate dehydrogenase mRNA blastn 13686 161 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Saprolegniaceae Saprolegnia Saprolegnia diclina
1178132 1178132 PRJNA689790_S_NODE_3301_length_343_cov_3.692810_g3186_i0 PRJNA689790 3301 343 3.69281 12.6663383 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 195 5.09e-45   NTclustered gi|2248513076|ref|NC_063796.1| 4786 g3186 i0 79.57 89.4810495626822 279 51 80 5 44 319 21985 21710 Phytophthora cryptogea culture CBS:418.71 mitochondrion, complete genome blastn 30692 196 0.994897959183674 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cryptogea
5006458 5006458 PRJNA689790_S_NODE_2204_length_438_cov_7.394015_g2092_i0 PRJNA689790 2204 438 7.394015 32.3857857 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 291 8.239999999999997e-74   NTclustered gi|2795040529|ref|XM_067944818.1| 4785 g2092 i0 80.978 36.1598173515982 368 68 84 2 68 434 405 39 Phytophthora cinnamomi 60S ribosomal protein L23 (IUM83_19754), partial mRNA blastn 15838 292 0.996575342465753 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
5772280 5772280 PRJNA689790_S_NODE_10785_length_181_cov_1.354167_g10670_i0 PRJNA689790 10785 181 1.354167 2.45104227 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 243 8.5e-60   NTclustered gi|695445584|ref|XM_009535971.1| 67593 g10670 i0 91.061 100.110497237569 179 16 99 0 1 179 290 112 Phytophthora sojae GTP-binding protein mRNA blastn 18120 243 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
7047350 7047350 PRJNA689790_S_NODE_5586_length_254_cov_1.608295_g5471_i0 PRJNA689790 5586 254 1.608295 4.0850693 Phytophthora infestans 4787 SAR_Eukaryotes SAR_Eukaryotes 91.6 4.89e-14   NTclustered gi|301118335|ref|XM_002906850.1| 403677 g5471 i0 88.158 0.299212598425197 76 9 30 0 2 77 1323 1398 Phytophthora infestans T30-4 peptidyl-prolyl cis-trans isomerase, putative (PITG_03856), mRNA blastn 76 91.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
7556073 7556073 PRJNA689790_S_NODE_6186_length_240_cov_5.044335_g6071_i0 PRJNA689790 6186 240 5.044335 12.106404 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 237 5.55e-58   NTclustered gi|33520224|gb|AY273969.1| 123356 g6071 i0 89.894 76.4791666666667 188 14 78 4 37 222 541 357 Hyaloperonospora parasitica large subunit ribosomal RNA gene, partial sequence blastn 18355 239 0.99163179916318 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Hyaloperonospora Hyaloperonospora parasitica
12148012 12148012 PRJNA689790_S_NODE_11870_length_173_cov_1.441176_g11755_i0 PRJNA689790 11870 173 1.441176 2.49323448 Phytophthora ramorum 164328 SAR_Eukaryotes SAR_Eukaryotes 176 8.26e-40   NTclustered gi|2794879152|ref|XM_067888628.1| 164328 g11755 i0 91.406 200.693641618497 128 11 74 0 45 172 263 136 Phytophthora ramorum Ubiquitin-60S ribosomal protein L40 (KRP23_393), partial mRNA blastn 34720 176 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
15971447 15971447 PRJNA689790_S_NODE_15513_length_155_cov_1.288136_g15398_i0 PRJNA689790 15513 155 1.288136 1.9966108 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 198 1.5499999999999999e-46   NTclustered gi|695440212|ref|XM_009534609.1| 67593 g15398 i0 89.677 84.0258064516129 155 16 100 0 1 155 380 226 Phytophthora sojae hypothetical protein partial mRNA blastn 13024 198 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
19029800 19029800 PRJNA689790_S_NODE_10355_length_184_cov_2.380952_g10240_i0 PRJNA689790 10355 184 2.380952 4.38095168 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.016   NTclustered gi|2795051005|ref|XM_067935858.1| 4785 g10240 i0 96.774 0.369565217391304 31 1 17 0 76 106 1551 1521 Phytophthora cinnamomi myosin-like protein (IUM83_11308), partial mRNA blastn 68 52.8 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
19029827 19029827 PRJNA689790_S_NODE_9835_length_189_cov_1.026316_g9720_i0 PRJNA689790 9835 189 1.026316 1.93973724 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 1.57e-27   NTclustered gi|2795049776|ref|XM_067938656.1| 4785 g9720 i0 84.783 6.71957671957672 138 17 72 4 1 136 367 232 Phytophthora cinnamomi polyadenylate-binding protein 1-B (IUM83_13951), partial mRNA blastn 1270 135 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21071133 21071133 PRJNA689790_S_NODE_1277_length_587_cov_5.110909_g1180_i0 PRJNA689790 1277 587 5.110909 30.00103583 Phytophthora cinnamomi 4785 SAR_Eukaryotes SAR_Eukaryotes 193 3.28e-44   NTclustered gi|2795041697|ref|XM_067930728.1| 4785 g1180 i0 75.333 8.38500851788756 450 85 75 20 7 446 1 434 Phytophthora cinnamomi 60S ribosomal protein L27a (IUM83_06510), partial mRNA blastn 4922 193 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cinnamomi
21580342 21580342 PRJNA689790_S_NODE_8797_length_199_cov_1.882716_g8682_i0 PRJNA689790 8797 199 1.882716 3.74660484 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 270 4.38e-68   NTclustered gi|1233048122|gb|KX252489.1| 89336 g8682 i0 92.147 95.9798994974874 191 15 96 0 7 197 25 215 Phytophthora sp. isolate 38D9(authentic) beta-tubulin gene, partial cds blastn 19100 272 0.992647058823529 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp.
24130057 24130057 PRJNA689790_S_NODE_9779_length_189_cov_2.026316_g9664_i0 PRJNA689790 9779 189 2.026316 3.82973724 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 283 5.28e-72   NTclustered gi|2794877752|ref|XM_067885264.1| 164328 g9664 i0 93.684 99.3650793650794 190 10 100 2 1 189 518 330 Phytophthora ramorum Actin-1 (KRP23_162), partial mRNA blastn 18780 283 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora ramorum
25404622 25404622 PRJNA689790_S_NODE_8280_length_205_cov_1.857143_g8165_i0 PRJNA689790 8280 205 1.857143 3.80714315 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 100 6.3e-17   NTclustered gi|1233049851|gb|KX251613.1| 89336 g8165 i0 79.592 53.0048780487805 147 24 70 6 11 154 489 346 Phytophthora sp. isolate 67C5(authentic) heat shock protein 90 gene, partial cds blastn 10866 100 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;