RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Myxococcota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA689790 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1944757 1944757 PRJNA689790_S_NODE_15702_length_154_cov_1.666667_g15587_i0 PRJNA689790 15702 154 1.666667 2.56666718 Archangium gephyra 48 Bacteria Bacteria 182 1.54e-41   NTclustered gi|2809295724|gb|CP102578.1| 48 g15587 i0 89.51 129.149350649351 143 15 93 0 2 144 3887250 3887392 Archangium gephyra strain SDU49 chromosome, complete genome blastn 19889 182 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium gephyra
3219576 3219576 PRJNA689790_S_NODE_16203_length_152_cov_2.017391_g16088_i0 PRJNA689790 16203 152 2.017391 3.06643432 Polyangium aurulentum 2567896 Bacteria Bacteria 63.9 5.74e-6   NTclustered gi|2235996827|gb|CP079217.1| 2567896 g16088 i0 87.5 0.644736842105263 56 5 36 2 3 57 7953250 7953196 Polyangium aurulentum strain SDU3-1 chromosome, complete genome blastn 98 63.9 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Polyangium Polyangium aurulentum
18520755 18520755 PRJNA689790_S_NODE_10035_length_187_cov_1.560000_g9920_i0 PRJNA689790 10035 187 1.56 2.9172 Minicystis rosea 888845 Bacteria Bacteria 56.5 0.001   NTclustered gi|1127353251|gb|CP016211.1| 888845 g9920 i0 96.97 0.176470588235294 33 1 18 0 43 75 2157055 2157087 Minicystis rosea strain DSM 24000 chromosome, complete genome blastn 33 56.5 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Minicystis Minicystis rosea
21071124 21071124 PRJNA689790_S_NODE_10017_length_187_cov_1.820000_g9902_i0 PRJNA689790 10017 187 1.82 3.4034 Anaeromyxobacter dehalogenans 161493 Bacteria Bacteria 93.5 9.43e-15   NTclustered gi|85772941|gb|CP000251.1| 290397 g9902 i0 90.411 1.89839572192513 73 4 39 3 74 146 617660 617591 Anaeromyxobacter dehalogenans 2CP-C, complete genome blastn 355 93.5 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;