RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Cnidaria"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA689790 · 6 ✖

analysis 1

  • blastn · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1178127 1178127 PRJNA689790_S_NODE_15141_length_156_cov_2.109244_g15026_i0 PRJNA689790 15141 156 2.109244 3.29042064 Metazoa 33208 Cnidaria other_Eukaryota 65.8 1.65e-6   NTclustered gi|2917940745|emb|OZ237569.1| 6108 g15026 i0 100 2.92948717948718 35 0 22 0 3 37 347784 347818 Anemonia sulcata genome assembly, chromosome: 15 blastn 457 65.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata
4496816 4496816 PRJNA689790_S_NODE_964_length_681_cov_3.332298_g881_i0 PRJNA689790 964 681 3.332298 22.69294938 Hydra vulgaris 6087 Cnidaria other_Eukaryota 327 1.01e-84   NTclustered gi|2744814935|ref|XM_002166641.4| 6087 g881 i0 80.6 23.8619676945668 433 76 63 8 1 429 233 661 PREDICTED: Hydra vulgaris GTP-binding nuclear protein Ran (LOC100211661), mRNA blastn 16250 327 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
10872777 10872777 PRJNA689790_S_NODE_16249_length_152_cov_1.660870_g16134_i0 PRJNA689790 16249 152 1.66087 2.5245224 Rhopilema esculentum 499914 Cnidaria other_Eukaryota 89.8 9.47e-14   NTclustered gi|2729076751|ref|XM_065200688.1| 499914 g16134 i0 85.227 42.9802631578947 88 11 57 2 26 112 645 731 PREDICTED: Rhopilema esculentum serine/threonine-protein kinase OSR1-like (LOC135684966), mRNA blastn 6533 89.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Scyphozoa Rhizostomeae Rhizostomatidae Rhopilema Rhopilema esculentum
10872819 10872819 PRJNA689790_S_NODE_8469_length_203_cov_1.783133_g8354_i0 PRJNA689790 8469 203 1.783133 3.61975999 Orbicella faveolata 48498 Cnidaria other_Eukaryota 100 6.23e-17   NTclustered gi|1176072262|ref|XM_020750398.1| 48498 g8354 i0 80.142 1.39901477832512 141 23 67 4 65 201 938 799 PREDICTED: Orbicella faveolata ATP synthase subunit gamma, mitochondrial-like (LOC110044813), mRNA blastn 284 100 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Merulinidae Orbicella Orbicella faveolata
19795674 19795674 PRJNA689790_S_NODE_596_length_904_cov_3.512111_g538_i0 PRJNA689790 596 904 3.512111 31.74948344 Hydra vulgaris 6087 Cnidaria other_Eukaryota 54.7 0.025   NTclustered gi|2744889029|ref|XM_065810454.1| 6087 g538 i0 100 0.0641592920353982 29 0 3 0 781 809 2276 2248 PREDICTED: Hydra vulgaris kinesin-like protein KIF28P (LOC100208423), transcript variant X3, mRNA blastn 58 54.7 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
21580343 21580343 PRJNA689790_S_NODE_8817_length_199_cov_1.512346_g8702_i0 PRJNA689790 8817 199 1.512346 3.00956854 Metazoa 33208 Cnidaria other_Eukaryota 52.8 0.017   NTclustered gi|2917940766|emb|OZ237573.1| 6108 g8702 i0 100 0.562814070351759 28 0 14 0 95 122 7875815 7875842 Anemonia sulcata genome assembly, chromosome: 19 blastn 112 52.8 1 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Actiniaria Actiniidae Anemonia Anemonia sulcata

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;