RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA689790 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1944735 1944735 PRJNA689790_S_NODE_11282_length_177_cov_1.392857_g11167_i0 PRJNA689790 11282 177 1.392857 2.46535689 Stentor coeruleus 5963 SAR_Eukaryotes SAR_Eukaryotes 265 1.7599999999999998e-66   NTclustered gi|3550263|gb|AF079839.1|AF079839 5963 g11167 i0 95.294 0.96045197740113 170 3 95 5 1 169 262 427 Stentor coeruleus G protein alpha GI2-like subunit mRNA, partial cds blastn 170 265 1 Eukaryota Sar   Ciliophora Heterotrichea Heterotrichida Stentoridae Stentor Stentor coeruleus
3729984 3729984 PRJNA689790_S_NODE_1183_length_610_cov_9.961606_g1089_i0 PRJNA689790 1183 610 9.961606 60.7657966 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 353 1.48e-92   NTclustered gi|92790165|emb|AJ965268.1| 47892 g1089 i0 87.138 131.506557377049 311 40 51 0 300 610 773 463 Eudiplodinium maggii partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 80219 353 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Eudiplodinium Eudiplodinium maggii
8321860 8321860 PRJNA689790_S_NODE_1967_length_464_cov_13.201405_g1855_i0 PRJNA689790 1967 464 13.201405 61.2545192 Eudiplodinium maggii 47892 SAR_Eukaryotes SAR_Eukaryotes 364 5.1e-96   NTclustered gi|92790165|emb|AJ965268.1| 47892 g1855 i0 87.58 175.275862068966 314 39 68 0 151 464 776 463 Eudiplodinium maggii partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 81328 364 1 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Eudiplodinium Eudiplodinium maggii
8321883 8321883 PRJNA689790_S_NODE_4467_length_287_cov_2.944000_g4352_i0 PRJNA689790 4467 287 2.944 8.44928 Lamtostyla sp. LPJ-2005 331616 SAR_Eukaryotes SAR_Eukaryotes 370 6.45e-98   NTclustered gi|67462297|gb|DQ062090.1| 331616 g4352 i0 90.391 29.1533101045296 281 27 98 0 7 287 1019 739 Lamtostyla sp. LPJ-2005 heta shock protein 70 mRNA, partial cds; macronuclear blastn 8367 370 1 Eukaryota Sar   Ciliophora Spirotrichea Stichotrichida Amphisiellidae Lamtostyla Lamtostyla sp. LPJ-2005
17755986 17755986 PRJNA689790_S_NODE_1094_length_638_cov_10.064892_g1004_i0 PRJNA689790 1094 638 10.064892 64.21401096 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 353 1.55e-92   NTclustered gi|92790165|emb|AJ965268.1| 47892 g1004 i0 87.138 126.213166144201 311 40 49 0 1 311 463 773 Eudiplodinium maggii partial mRNA for Polyubiqutin 1 (polyubiqutin 1 gene) blastn 80524 355 0.994366197183099 Eukaryota Sar   Ciliophora Litostomatea Entodiniomorphida Ophryoscolecidae Eudiplodinium Eudiplodinium maggii
25404615 25404615 PRJNA689790_S_NODE_4140_length_300_cov_3.642586_g4025_i0 PRJNA689790 4140 300 3.642586 10.927758 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 135 2.6900000000000003e-27   NTclustered gi|2431531581|ref|NC_070360.1| 153251 g4025 i0 81.006 12.3066666666667 179 26 59 8 118 295 6314 6143 Cryptocaryon irritans mitochondrion, complete genome blastn 3692 135 1 Eukaryota Sar   Ciliophora       Cryptocaryon Cryptocaryon irritans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;