RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA689790 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1944748 1944748 PRJNA689790_S_NODE_14062_length_161_cov_1.548387_g13947_i0 PRJNA689790 14062 161 1.548387 2.49290307 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 54.7 0.004   NTclustered gi|2893358397|emb|OZ220688.1| 2651171 g13947 i0 100 0.180124223602484 29 0 18 0 132 160 4549977 4550005 MAG: Thermoanaerobaculia bacterium isolate 17c936d4-adfa-4882-ba3e-7fd0bc385902 genome assembly, chromosome: 1 blastn 29 54.7 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
23621631 23621631 PRJNA689790_S_NODE_7119_length_222_cov_2.275676_g7004_i0 PRJNA689790 7119 222 2.275676 5.05200072 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 52.8 0.02   NTclustered gi|2874253700|emb|OY969426.1| 2651171 g7004 i0 96.774 0.13963963963964 31 1 14 0 67 97 3457618 3457648 MAG: Thermoanaerobaculia bacterium isolate MFD02979.bin.c.1 genome assembly, chromosome: 1 blastn 31 52.8 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
23621645 23621645 PRJNA689790_S_NODE_9719_length_190_cov_1.241830_g9604_i0 PRJNA689790 9719 190 1.24183 2.359477 uncultured Holophaga sp. 188475 Bacteria Bacteria 56.5 0.001   NTclustered gi|2621785467|emb|OY781925.1| 188475 g9604 i0 100 0.157894736842105 30 0 16 0 20 49 878245 878216 MAG: uncultured Holophaga sp. isolate 48fd71e5-2ffc-43bf-b6f5-ca4e00a42c30 genome assembly, chromosome: 1 blastn 30 56.5 1 Bacteria   Pseudomonadati Acidobacteriota Holophagae Holophagales Holophagaceae Holophaga uncultured Holophaga sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;