RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA689790" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA689790 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
668728 668728 PRJNA689790_S_NODE_2001_length_461_cov_2.915094_g1889_i0 PRJNA689790 2001 461 2.915094 13.43858334 Thermus brockianus 56956 Bacteria Bacteria 54.7 0.012   NTclustered gi|1102955210|gb|CP016312.1| 56956 g1889 i0 92.5 0.17353579175705 40 0 8 3 171 208 283113 283075 Thermus brockianus strain GE-1 chromosome, complete genome blastn 80 54.7 1 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus brockianus
7047369 7047369 PRJNA689790_S_NODE_8386_length_204_cov_1.622754_g8271_i0 PRJNA689790 8386 204 1.622754 3.31041816 Deinococcus aetherius 200252 Bacteria Bacteria 108 3.74e-19   NTclustered gi|2281894955|dbj|AP026560.1| 200252 g8271 i0 92.105 7.60294117647059 76 6 37 0 64 139 2711438 2711363 Deinococcus aetherius ST0316 DNA, complete genome blastn 1551 108 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus aetherius
12657526 12657526 PRJNA689790_S_NODE_10150_length_186_cov_1.771812_g10035_i0 PRJNA689790 10150 186 1.771812 3.29557032 Deinococcus 1298 Bacteria Bacteria 113 7.19e-21   NTclustered gi|730601855|gb|CP010028.1| 57497 g10035 i0 86.111 43.8494623655914 108 11 57 4 77 182 3163778 3163883 Deinococcus swuensis strain DY59, complete genome blastn 8156 113 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus radiopugnans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;